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The map label for this gene is ybbK [C]

Identifier: 124486515

GI number: 124486515

Start: 1737740

End: 1738777

Strand: Reverse

Name: ybbK [C]

Synonym: Mlab_1703

Alternate gene names: 124486515

Gene position: 1738777-1737740 (Counterclockwise)

Preceding gene: 124486516

Following gene: 124486514

Centisome position: 96.33

GC content: 52.22

Gene sequence:

>1038_bases
ATGGATGCATTTACATTACTTGCAATAATTTTAGTTGTCATCATCCTTTTCCTGTTTGCAAAAGGTGTTGTCATCGTTCA
GCCGTATCAGAAAGGACTAGCTGTCCGTCTTGGAACCTACACGGGTCAGGTCAATCCCGGTTTCAAATGGGTCGTCCCGT
TCATCACGACTGTCTACAAACTCGATCTCAGGACCCAGGTCATCGACGTTCCGTCCCAGGAAGTCATCACCAAAGATAAC
TCTCCGACCGATGTGGATGCGATCATTTATGTCCGCGTCATGGATCCGGAACGTGCCTTCTTCGAAGTATCGAATTACCG
TCAGGCAACTGTGGCCCTTGCCCAGACGAGTCTTCGTGGAATCATCGGCGATATGGAGCTTGATGAAGTTCTCTACAACC
GTGATATGATTAACCGCAGGCTCAGAGATATCCTCGATAAGGAAACCGACCAGTGGGGTGTCAAGATCGAACGCGTCGAG
ATCAAAGAGGTCAACCCGATCGGCGCCGTCAAACAGGCAATGACCGAACAGACCGCAGCCGAAAGAGAACGGCGTGCAGC
AATCCTGCGTGCGGACGGAGAAAAGCGTGCTGCGATCCTCAAAGCCGAGGGTCTCAGACAGAGTATGATCCTCGAGTCCG
AAGGTGAACGTCAGAGTAAGATCCTTCGTGCGGAAGGTACCAGGCAGAGCCGGATCCTCGAAGCCCAGGGAGAAGCCCAG
GGTCTTCGGATCGTTTCGCTTGGTTCCCGCAGTCTGGATAAACGTTCGATCACGGTCCTCTCCTTAAACACCATGCAGAA
GATGGCCGACGGTCAGGCGACCAAGATCATCTTCCCGTTCGAGCTTACCAATCTGGTCAAGCAGGGTGCAAAGTTCCTCG
GCGGGGAAGATCTTGCTGAGGTCGACGAGATCCCCGATATAACTCTGGATGAAAGCATCTTAGGAGACCTCCCGAACAAG
GAAGAGATCGCCAAAGCCGTCGAATCGGTGAAAAACGCAAGCGAACTTGCAAAAACACCGGAAGATATCGCCGACTGA

Upstream 100 bases:

>100_bases
GTGGAGTGCAAAATGTACTGACGGGACCATCCCTCCCGGAACAAAAGTCGAGGTGACCGCAGCAAGCGGGGTTCACCTCA
CAGTAAAAAAGGTCTAATTT

Downstream 100 bases:

>100_bases
TACCTCTCCTTTTTTTCGTACCTTTTTTCGTATTCGGTACTGCAGGGCCGGAAAATACACGTCCCGCCGGCCAATGAAAA
CTAACTTACCCCGATACGAC

Product: SPFH domain-containing protein/band 7 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 345; Mature: 345

Protein sequence:

>345_residues
MDAFTLLAIILVVIILFLFAKGVVIVQPYQKGLAVRLGTYTGQVNPGFKWVVPFITTVYKLDLRTQVIDVPSQEVITKDN
SPTDVDAIIYVRVMDPERAFFEVSNYRQATVALAQTSLRGIIGDMELDEVLYNRDMINRRLRDILDKETDQWGVKIERVE
IKEVNPIGAVKQAMTEQTAAERERRAAILRADGEKRAAILKAEGLRQSMILESEGERQSKILRAEGTRQSRILEAQGEAQ
GLRIVSLGSRSLDKRSITVLSLNTMQKMADGQATKIIFPFELTNLVKQGAKFLGGEDLAEVDEIPDITLDESILGDLPNK
EEIAKAVESVKNASELAKTPEDIAD

Sequences:

>Translated_345_residues
MDAFTLLAIILVVIILFLFAKGVVIVQPYQKGLAVRLGTYTGQVNPGFKWVVPFITTVYKLDLRTQVIDVPSQEVITKDN
SPTDVDAIIYVRVMDPERAFFEVSNYRQATVALAQTSLRGIIGDMELDEVLYNRDMINRRLRDILDKETDQWGVKIERVE
IKEVNPIGAVKQAMTEQTAAERERRAAILRADGEKRAAILKAEGLRQSMILESEGERQSKILRAEGTRQSRILEAQGEAQ
GLRIVSLGSRSLDKRSITVLSLNTMQKMADGQATKIIFPFELTNLVKQGAKFLGGEDLAEVDEIPDITLDESILGDLPNK
EEIAKAVESVKNASELAKTPEDIAD
>Mature_345_residues
MDAFTLLAIILVVIILFLFAKGVVIVQPYQKGLAVRLGTYTGQVNPGFKWVVPFITTVYKLDLRTQVIDVPSQEVITKDN
SPTDVDAIIYVRVMDPERAFFEVSNYRQATVALAQTSLRGIIGDMELDEVLYNRDMINRRLRDILDKETDQWGVKIERVE
IKEVNPIGAVKQAMTEQTAAERERRAAILRADGEKRAAILKAEGLRQSMILESEGERQSKILRAEGTRQSRILEAQGEAQ
GLRIVSLGSRSLDKRSITVLSLNTMQKMADGQATKIIFPFELTNLVKQGAKFLGGEDLAEVDEIPDITLDESILGDLPNK
EEIAKAVESVKNASELAKTPEDIAD

Specific function: Unknown

COG id: COG0330

COG function: function code O; Membrane protease subunits, stomatin/prohibitin homologs

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the band 7/mec-2 family [H]

Homologues:

Organism=Homo sapiens, GI7305503, Length=293, Percent_Identity=32.0819112627986, Blast_Score=139, Evalue=3e-33,
Organism=Homo sapiens, GI221316744, Length=195, Percent_Identity=35.3846153846154, Blast_Score=114, Evalue=2e-25,
Organism=Homo sapiens, GI21686995, Length=195, Percent_Identity=35.3846153846154, Blast_Score=114, Evalue=2e-25,
Organism=Homo sapiens, GI38016911, Length=165, Percent_Identity=36.3636363636364, Blast_Score=113, Evalue=3e-25,
Organism=Homo sapiens, GI7657615, Length=184, Percent_Identity=29.8913043478261, Blast_Score=98, Evalue=1e-20,
Organism=Homo sapiens, GI20149563, Length=137, Percent_Identity=28.4671532846715, Blast_Score=65, Evalue=7e-11,
Organism=Escherichia coli, GI1786697, Length=284, Percent_Identity=40.4929577464789, Blast_Score=202, Evalue=2e-53,
Organism=Caenorhabditis elegans, GI17569493, Length=224, Percent_Identity=36.1607142857143, Blast_Score=133, Evalue=1e-31,
Organism=Caenorhabditis elegans, GI193209764, Length=224, Percent_Identity=36.1607142857143, Blast_Score=133, Evalue=2e-31,
Organism=Caenorhabditis elegans, GI32564147, Length=226, Percent_Identity=33.1858407079646, Blast_Score=129, Evalue=2e-30,
Organism=Caenorhabditis elegans, GI32566490, Length=176, Percent_Identity=39.7727272727273, Blast_Score=117, Evalue=6e-27,
Organism=Caenorhabditis elegans, GI71987612, Length=198, Percent_Identity=36.3636363636364, Blast_Score=117, Evalue=1e-26,
Organism=Caenorhabditis elegans, GI17569499, Length=163, Percent_Identity=38.6503067484663, Blast_Score=116, Evalue=2e-26,
Organism=Caenorhabditis elegans, GI25153583, Length=198, Percent_Identity=36.3636363636364, Blast_Score=116, Evalue=2e-26,
Organism=Caenorhabditis elegans, GI17570459, Length=201, Percent_Identity=36.318407960199, Blast_Score=114, Evalue=7e-26,
Organism=Caenorhabditis elegans, GI71987621, Length=198, Percent_Identity=36.3636363636364, Blast_Score=114, Evalue=7e-26,
Organism=Caenorhabditis elegans, GI17569497, Length=200, Percent_Identity=36, Blast_Score=112, Evalue=3e-25,
Organism=Caenorhabditis elegans, GI71989955, Length=186, Percent_Identity=39.247311827957, Blast_Score=110, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI71989948, Length=186, Percent_Identity=39.247311827957, Blast_Score=109, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI193210507, Length=192, Percent_Identity=35.4166666666667, Blast_Score=108, Evalue=5e-24,
Organism=Caenorhabditis elegans, GI17570161, Length=192, Percent_Identity=35.4166666666667, Blast_Score=108, Evalue=6e-24,
Organism=Caenorhabditis elegans, GI71989963, Length=125, Percent_Identity=37.6, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17542664, Length=164, Percent_Identity=27.4390243902439, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI45550506, Length=276, Percent_Identity=33.3333333333333, Blast_Score=138, Evalue=7e-33,
Organism=Drosophila melanogaster, GI45556022, Length=205, Percent_Identity=39.0243902439024, Blast_Score=130, Evalue=9e-31,
Organism=Drosophila melanogaster, GI18860517, Length=194, Percent_Identity=38.1443298969072, Blast_Score=122, Evalue=4e-28,
Organism=Drosophila melanogaster, GI24657857, Length=196, Percent_Identity=38.265306122449, Blast_Score=119, Evalue=3e-27,
Organism=Drosophila melanogaster, GI281365664, Length=196, Percent_Identity=38.265306122449, Blast_Score=119, Evalue=3e-27,
Organism=Drosophila melanogaster, GI62484448, Length=196, Percent_Identity=38.265306122449, Blast_Score=119, Evalue=3e-27,
Organism=Drosophila melanogaster, GI62484274, Length=196, Percent_Identity=38.265306122449, Blast_Score=119, Evalue=4e-27,
Organism=Drosophila melanogaster, GI21356845, Length=194, Percent_Identity=30.9278350515464, Blast_Score=115, Evalue=4e-26,
Organism=Drosophila melanogaster, GI281361633, Length=191, Percent_Identity=31.413612565445, Blast_Score=109, Evalue=3e-24,
Organism=Drosophila melanogaster, GI281361631, Length=191, Percent_Identity=31.413612565445, Blast_Score=109, Evalue=3e-24,
Organism=Drosophila melanogaster, GI28573263, Length=196, Percent_Identity=29.5918367346939, Blast_Score=105, Evalue=6e-23,
Organism=Drosophila melanogaster, GI281361635, Length=136, Percent_Identity=31.6176470588235, Blast_Score=84, Evalue=1e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001107
- InterPro:   IPR018080
- InterPro:   IPR001972 [H]

Pfam domain/function: PF01145 Band_7 [H]

EC number: NA

Molecular weight: Translated: 38415; Mature: 38415

Theoretical pI: Translated: 4.78; Mature: 4.78

Prosite motif: PS01270 BAND_7

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDAFTLLAIILVVIILFLFAKGVVIVQPYQKGLAVRLGTYTGQVNPGFKWVVPFITTVYK
CCHHHHHHHHHHHHHHHHHHCCEEEEEECCCCEEEEEECEECCCCCCCEEHHHHHHHHHH
LDLRTQVIDVPSQEVITKDNSPTDVDAIIYVRVMDPERAFFEVSNYRQATVALAQTSLRG
HHHHHEEECCCCHHHEECCCCCCCEEEEEEEEEECCCHHHHHHHCCHHHHHHHHHHHHHH
IIGDMELDEVLYNRDMINRRLRDILDKETDQWGVKIERVEIKEVNPIGAVKQAMTEQTAA
HHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHH
ERERRAAILRADGEKRAAILKAEGLRQSMILESEGERQSKILRAEGTRQSRILEAQGEAQ
HHHHHHEEEECCCCHHHEEHHHHCCHHHHHHCCCCCHHHHHHHHCCCCHHHHHHCCCCCC
GLRIVSLGSRSLDKRSITVLSLNTMQKMADGQATKIIFPFELTNLVKQGAKFLGGEDLAE
CEEEEEECCCCCCCCEEEEEEHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHCCCCCHHH
VDEIPDITLDESILGDLPNKEEIAKAVESVKNASELAKTPEDIAD
HHCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHCC
>Mature Secondary Structure
MDAFTLLAIILVVIILFLFAKGVVIVQPYQKGLAVRLGTYTGQVNPGFKWVVPFITTVYK
CCHHHHHHHHHHHHHHHHHHCCEEEEEECCCCEEEEEECEECCCCCCCEEHHHHHHHHHH
LDLRTQVIDVPSQEVITKDNSPTDVDAIIYVRVMDPERAFFEVSNYRQATVALAQTSLRG
HHHHHEEECCCCHHHEECCCCCCCEEEEEEEEEECCCHHHHHHHCCHHHHHHHHHHHHHH
IIGDMELDEVLYNRDMINRRLRDILDKETDQWGVKIERVEIKEVNPIGAVKQAMTEQTAA
HHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHHH
ERERRAAILRADGEKRAAILKAEGLRQSMILESEGERQSKILRAEGTRQSRILEAQGEAQ
HHHHHHEEEECCCCHHHEEHHHHCCHHHHHHCCCCCHHHHHHHHCCCCHHHHHHCCCCCC
GLRIVSLGSRSLDKRSITVLSLNTMQKMADGQATKIIFPFELTNLVKQGAKFLGGEDLAE
CEEEEEECCCCCCCCEEEEEEHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHCCCCCHHH
VDEIPDITLDESILGDLPNKEEIAKAVESVKNASELAKTPEDIAD
HHCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9371463 [H]