Click here to switch to the map view.

The map label for this gene is 124486440

Identifier: 124486440

GI number: 124486440

Start: 1654968

End: 1655678

Strand: Reverse

Name: 124486440

Synonym: Mlab_1628

Alternate gene names: NA

Gene position: 1655678-1654968 (Counterclockwise)

Preceding gene: 124486442

Following gene: 124486439

Centisome position: 91.73

GC content: 47.26

Gene sequence:

>711_bases
ATGAAGCCGGTACTTCGCCAGCAGCTTGCCGAGAAGATGGCAGGCGAAATCACCCTCTCCGATTCACCGGGAAAAGCTCT
GAAAAAATGGCGTACAAGTTTTCAGATAGCTCCAGGTGTACTCGCAGATCATCTTGGAGTATCTCCGTCCGTTATCAGTG
ATTATGAGAGCGGTCGGAGGAAAAGTCCGGGAACGGGTGTCGTTGGGAAAATCGTAGACTCGCTTCTGGATGTTGACGAA
GAAAATGGTGGGACATACATCAAAAAGTATGGCAAACTCCTGTTCTCGGATTACGACGACGAGGTCATTTATGATATTCA
TGACTTCGCTTCTTCTATTCCAATCAAGGAATTATCGGAACTGATTGAATGTACCCTCATCTGCGGGGAGCTGGATTCAC
AAATCTTCGGCTATACTGTTATAAACAGTACGAATGCCATTCTGAATCTTTCGCCCAATGAATTCAACCGCATTTACGGC
TGGAGTACGGAGCGCGCTCTGATTTTCACGGATATTTCAACCGGAAAATCCCCGATGATCGCAATCCGCGTGACACCGTT
CAAACCCCCGTATGTTATCCTTCAGGGGATAGAGGAGGCACATGTCAACCCGCTCGTCAAAAAGCTTGCAGAAAAAGATC
ACATTACCGTTCTCTGTACGCCCCTGGGAGTTCAGGATCTCGTTACACGTTTAAGGAAAACACAATGGTAG

Upstream 100 bases:

>100_bases
TGTTGGAGTGATTACTATATATGAGTTAGTATCGGTCATGTTCGCGTATTGACGAATTCGACAACCAACTTCTTATGTAA
GTAACGAAATATAGGTAGGT

Downstream 100 bases:

>100_bases
GCATAATCACCTACGGGGCATACATCCCCCGTTTCAGAATAAAAGTCGAAGAGATTGCCCGTGTATGGGGAGCGAACGCC
GCGGAGATCACCGGCGGTCT

Product: XRE family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 236; Mature: 236

Protein sequence:

>236_residues
MKPVLRQQLAEKMAGEITLSDSPGKALKKWRTSFQIAPGVLADHLGVSPSVISDYESGRRKSPGTGVVGKIVDSLLDVDE
ENGGTYIKKYGKLLFSDYDDEVIYDIHDFASSIPIKELSELIECTLICGELDSQIFGYTVINSTNAILNLSPNEFNRIYG
WSTERALIFTDISTGKSPMIAIRVTPFKPPYVILQGIEEAHVNPLVKKLAEKDHITVLCTPLGVQDLVTRLRKTQW

Sequences:

>Translated_236_residues
MKPVLRQQLAEKMAGEITLSDSPGKALKKWRTSFQIAPGVLADHLGVSPSVISDYESGRRKSPGTGVVGKIVDSLLDVDE
ENGGTYIKKYGKLLFSDYDDEVIYDIHDFASSIPIKELSELIECTLICGELDSQIFGYTVINSTNAILNLSPNEFNRIYG
WSTERALIFTDISTGKSPMIAIRVTPFKPPYVILQGIEEAHVNPLVKKLAEKDHITVLCTPLGVQDLVTRLRKTQW
>Mature_236_residues
MKPVLRQQLAEKMAGEITLSDSPGKALKKWRTSFQIAPGVLADHLGVSPSVISDYESGRRKSPGTGVVGKIVDSLLDVDE
ENGGTYIKKYGKLLFSDYDDEVIYDIHDFASSIPIKELSELIECTLICGELDSQIFGYTVINSTNAILNLSPNEFNRIYG
WSTERALIFTDISTGKSPMIAIRVTPFKPPYVILQGIEEAHVNPLVKKLAEKDHITVLCTPLGVQDLVTRLRKTQW

Specific function: Unknown

COG id: COG1709

COG function: function code K; Predicted transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001387
- InterPro:   IPR017271
- InterPro:   IPR010982 [H]

Pfam domain/function: PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 26183; Mature: 26183

Theoretical pI: Translated: 5.72; Mature: 5.72

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPVLRQQLAEKMAGEITLSDSPGKALKKWRTSFQIAPGVLADHLGVSPSVISDYESGRR
CCHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHCCC
KSPGTGVVGKIVDSLLDVDEENGGTYIKKYGKLLFSDYDDEVIYDIHDFASSIPIKELSE
CCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCHHEEEHHHHHHCCCHHHHHH
LIECTLICGELDSQIFGYTVINSTNAILNLSPNEFNRIYGWSTERALIFTDISTGKSPMI
HHHHHHHHHHHCCHHHEEEEEECCCEEEECCCCHHHHHCCCCCCCEEEEEECCCCCCCEE
AIRVTPFKPPYVILQGIEEAHVNPLVKKLAEKDHITVLCTPLGVQDLVTRLRKTQW
EEEECCCCCCHHHHHCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCC
>Mature Secondary Structure
MKPVLRQQLAEKMAGEITLSDSPGKALKKWRTSFQIAPGVLADHLGVSPSVISDYESGRR
CCHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHCCC
KSPGTGVVGKIVDSLLDVDEENGGTYIKKYGKLLFSDYDDEVIYDIHDFASSIPIKELSE
CCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCHHEEEHHHHHHCCCHHHHHH
LIECTLICGELDSQIFGYTVINSTNAILNLSPNEFNRIYGWSTERALIFTDISTGKSPMI
HHHHHHHHHHHCCHHHEEEEEECCCEEEECCCCHHHHHCCCCCCCEEEEEECCCCCCCEE
AIRVTPFKPPYVILQGIEEAHVNPLVKKLAEKDHITVLCTPLGVQDLVTRLRKTQW
EEEECCCCCCHHHHHCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]