Click here to switch to the map view.

The map label for this gene is rpl12p

Identifier: 124486394

GI number: 124486394

Start: 1612398

End: 1612709

Strand: Reverse

Name: rpl12p

Synonym: Mlab_1579

Alternate gene names: 124486394

Gene position: 1612709-1612398 (Counterclockwise)

Preceding gene: 124486395

Following gene: 124486391

Centisome position: 89.35

GC content: 55.13

Gene sequence:

>312_bases
ATGGAGTATATTTACGCAGCTCTGTTAGTTCACTCCGCAGCTAAGACTGTGGATGAAGAATCGGTAAAGGCAGTTCTCTC
TGCCGCAGGTATCGCAGTTGACGACTCCCGTGTCAAAGCATTAATCGCAGCACTTGACGGTGTCGACATCGAGGAAGCAA
TCTCCAAGGCAGCAGCAGCACCAGTCGCCGTTGCAGCAGCACCGGCAGCAGCAGGCGCAGCAGCAGCAGTCGAAGAGGCA
GCAGCACCCGAAGAGAACAAGGAAGAAGAAGAAGAGAACGCCATGGCAGGCCTTGGCGCACTCTTCGGCTAA

Upstream 100 bases:

>100_bases
CCATCTATGAGAAGGGTGTCATCGAGCTGATCATCAGCAAGGCATACAGACAAGCAAACGCCCTGAAGGCAATTTAAACA
AATACAAAGGTGAAATCAAA

Downstream 100 bases:

>100_bases
ATCTTTTTTTTAATAATTAATCCGGCATCAATCGGCTGAGGTATTTCCCATCGTTTAGGATATTTTCCTGACGGGATTTT
TTTGAAAAAGAGGATGGTTT

Product: 50S ribosomal protein L12P

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 103; Mature: 103

Protein sequence:

>103_residues
MEYIYAALLVHSAAKTVDEESVKAVLSAAGIAVDDSRVKALIAALDGVDIEEAISKAAAAPVAVAAAPAAAGAAAAVEEA
AAPEENKEEEEENAMAGLGALFG

Sequences:

>Translated_103_residues
MEYIYAALLVHSAAKTVDEESVKAVLSAAGIAVDDSRVKALIAALDGVDIEEAISKAAAAPVAVAAAPAAAGAAAAVEEA
AAPEENKEEEEENAMAGLGALFG
>Mature_103_residues
MEYIYAALLVHSAAKTVDEESVKAVLSAAGIAVDDSRVKALIAALDGVDIEEAISKAAAAPVAVAAAPAAAGAAAAVEEA
AAPEENKEEEEENAMAGLGALFG

Specific function: Seems to be the binding site for several of the factors involved in protein synthesis and appears to be essential for accurate translation [H]

COG id: COG2058

COG function: function code J; Ribosomal protein L12E/L44/L45/RPP1/RPP2

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L12P family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001813
- InterPro:   IPR022295 [H]

Pfam domain/function: PF00428 Ribosomal_60s [H]

EC number: NA

Molecular weight: Translated: 10164; Mature: 10164

Theoretical pI: Translated: 3.85; Mature: 3.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEYIYAALLVHSAAKTVDEESVKAVLSAAGIAVDDSRVKALIAALDGVDIEEAISKAAAA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHCC
PVAVAAAPAAAGAAAAVEEAAAPEENKEEEEENAMAGLGALFG
CHHHHHCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MEYIYAALLVHSAAKTVDEESVKAVLSAAGIAVDDSRVKALIAALDGVDIEEAISKAAAA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHCC
PVAVAAAPAAAGAAAAVEEAAAPEENKEEEEENAMAGLGALFG
CHHHHHCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]