| Definition | Methanocorpusculum labreanum Z chromosome, complete genome. |
|---|---|
| Accession | NC_008942 |
| Length | 1,804,962 |
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The map label for this gene is 124486255
Identifier: 124486255
GI number: 124486255
Start: 1471316
End: 1472938
Strand: Reverse
Name: 124486255
Synonym: Mlab_1439
Alternate gene names: NA
Gene position: 1472938-1471316 (Counterclockwise)
Preceding gene: 124486256
Following gene: 124486254
Centisome position: 81.6
GC content: 50.28
Gene sequence:
>1623_bases ATGCTTCCGTTTATACAGAATATAAAAAATCGTATCCGTGTCGAGCACGTGATCTTTGCCATTCTGATTCTGGCGATCAT TCTCAGATTCGCTTTTCTGGATCTCAAGCTCTTTCATCACGATGAAGCGATTCATGCCTGGTTTTCCTATCAGCTTCTGA CCACCGGCAATTACCTGTATGATCCGGTATATCACGGACCCTTCCTATACTACATCACGGCATCCATGTTCGCTCTATTC GGCGACTCCGATCTAGTCGGCAGAATCCTTCCCTGTATTGCCGGCTGCGCTCTCATACCTCTCGTCTACTGGCTGTACAG ACTGCGGTATCTCACCGGCAAAGTCGCCGTCATCGCGGCACTTTTCCTTGCGATCGCTCCGGAACTGGTCTACTTCTCCC GGTTTTTACGAAACGATATCTTCGTGGCCTTCTTCTCACTCCTTCTGGTCGTTGCCTTCCTTGCATGGCTGGATAAAGGC AAATGGTATTATCTGGCCCTCGCGGCCGTGGCGGCGGCTCTCGGCATGTGTTCCAAGGAAAATATGCCGCTGATCCTTGT TACCTTCGGCGTATTCTTCCTCTATCTTCTTTGGACCAGAAAGATCACTCTTCCGGAAAAATGGATCCGTGATCTCATTA TCGCGGTCATTATCTTCGCTGGAATCATCTGCACGCTGTATTCCTCATTCTGGGCCCATCCCGAAATGATCCTGCAGGCA GGTCCTATGGCCATCGAACACTGGATTGCGATGCACAACGAACAGCGGATCGCCGGGCCGCCGGTGTTCTATCTCCTGAT GTTCATCTTGTATGAACTGCCGATCCTTATTCTGGCAGCAGCAGGCATCGTCATTTTCCTAGTGACCGGCAAAAAACGGT CATCTGAAAAAGAAGATGAGTTGGAAAATCCGGAGGAACAAGAACAAACTGAACCAAAAAAGAAGTTCTCCTTTGCGGCC TTGTTTCGCCGGCCGGAAGCTCCCGTCTTTGTTGACAGAAAAAAGGAGTTTATCCGGTTTGCCGTTTACTGGACATTGAT CGCCTGCCTTACCTATGCCTACATCGGGGAAAAAGTTCCCTGGCTTTCTCTCCATCAGCTGGTGCCGATGATCTTCGTCG CAGCGTTCGCTCTCACCTTTACCGGAAAATACTGGAAGATCCTTCTTGTTGTATGTGCCGTCCTTTTGTTTGCCACAACC TGTTATGTGGCATACACGCCGACGGATATCGCCGAGCCGATCATTCAGGTCCAGAACTCGGAGGATCTTGTTCCCCTGAT GGCAGCGATCGATGCCTCTGACAGAGTTGCTCTTGCGACCGATCAGGCCTGGCCCTTTATGTGGTATTACCGCGGTGATG CCTGGGACAGATTTACCTATTATGGAGGACTGAAGGATTCGTCCACGCTTCTTTCGGGAGACTATGATATCATCATCACC CATGATGACGAGAGTTACGACTCGCTTGACGGGTACACAAAAGAAACGATCCGGCTGAACTACTGGATCGACTGTCCAGG TACCGGGGAGGATCCTGGCTGGATCGCATACTTCTTCACCCGTGCTGGTAAAATCGGCAGTTACAACTTCGATGTGTTTA CCCGCACGACTCAGATCACATAA
Upstream 100 bases:
>100_bases GGCACACTCCTGTGATAAAATGTAAGCCAAGTTTATTAACAAATGATCGTTCGGACACAGATATTCATATCCTATCCTGA CAAACATACTTTACGCATCC
Downstream 100 bases:
>100_bases CTACTAAGAGTCTGCCCGCCAATATAGGTACATCTATAGGGATGTGTACATGGAACAGGGAATCGTGGAACTGGAAGAAC TACGCAGCAGATTACTGGAT
Product: hypothetical protein
Products: NA
Alternate protein names: NHL Repeat-Containing Protein; Glycosyl Transferase Family; Dolichyl-Phosphate-Mannose-Proteinmannosyltransfe Rase; Membrane-Bound Mannosyltransferase-Like Protein
Number of amino acids: Translated: 540; Mature: 540
Protein sequence:
>540_residues MLPFIQNIKNRIRVEHVIFAILILAIILRFAFLDLKLFHHDEAIHAWFSYQLLTTGNYLYDPVYHGPFLYYITASMFALF GDSDLVGRILPCIAGCALIPLVYWLYRLRYLTGKVAVIAALFLAIAPELVYFSRFLRNDIFVAFFSLLLVVAFLAWLDKG KWYYLALAAVAAALGMCSKENMPLILVTFGVFFLYLLWTRKITLPEKWIRDLIIAVIIFAGIICTLYSSFWAHPEMILQA GPMAIEHWIAMHNEQRIAGPPVFYLLMFILYELPILILAAAGIVIFLVTGKKRSSEKEDELENPEEQEQTEPKKKFSFAA LFRRPEAPVFVDRKKEFIRFAVYWTLIACLTYAYIGEKVPWLSLHQLVPMIFVAAFALTFTGKYWKILLVVCAVLLFATT CYVAYTPTDIAEPIIQVQNSEDLVPLMAAIDASDRVALATDQAWPFMWYYRGDAWDRFTYYGGLKDSSTLLSGDYDIIIT HDDESYDSLDGYTKETIRLNYWIDCPGTGEDPGWIAYFFTRAGKIGSYNFDVFTRTTQIT
Sequences:
>Translated_540_residues MLPFIQNIKNRIRVEHVIFAILILAIILRFAFLDLKLFHHDEAIHAWFSYQLLTTGNYLYDPVYHGPFLYYITASMFALF GDSDLVGRILPCIAGCALIPLVYWLYRLRYLTGKVAVIAALFLAIAPELVYFSRFLRNDIFVAFFSLLLVVAFLAWLDKG KWYYLALAAVAAALGMCSKENMPLILVTFGVFFLYLLWTRKITLPEKWIRDLIIAVIIFAGIICTLYSSFWAHPEMILQA GPMAIEHWIAMHNEQRIAGPPVFYLLMFILYELPILILAAAGIVIFLVTGKKRSSEKEDELENPEEQEQTEPKKKFSFAA LFRRPEAPVFVDRKKEFIRFAVYWTLIACLTYAYIGEKVPWLSLHQLVPMIFVAAFALTFTGKYWKILLVVCAVLLFATT CYVAYTPTDIAEPIIQVQNSEDLVPLMAAIDASDRVALATDQAWPFMWYYRGDAWDRFTYYGGLKDSSTLLSGDYDIIIT HDDESYDSLDGYTKETIRLNYWIDCPGTGEDPGWIAYFFTRAGKIGSYNFDVFTRTTQIT >Mature_540_residues MLPFIQNIKNRIRVEHVIFAILILAIILRFAFLDLKLFHHDEAIHAWFSYQLLTTGNYLYDPVYHGPFLYYITASMFALF GDSDLVGRILPCIAGCALIPLVYWLYRLRYLTGKVAVIAALFLAIAPELVYFSRFLRNDIFVAFFSLLLVVAFLAWLDKG KWYYLALAAVAAALGMCSKENMPLILVTFGVFFLYLLWTRKITLPEKWIRDLIIAVIIFAGIICTLYSSFWAHPEMILQA GPMAIEHWIAMHNEQRIAGPPVFYLLMFILYELPILILAAAGIVIFLVTGKKRSSEKEDELENPEEQEQTEPKKKFSFAA LFRRPEAPVFVDRKKEFIRFAVYWTLIACLTYAYIGEKVPWLSLHQLVPMIFVAAFALTFTGKYWKILLVVCAVLLFATT CYVAYTPTDIAEPIIQVQNSEDLVPLMAAIDASDRVALATDQAWPFMWYYRGDAWDRFTYYGGLKDSSTLLSGDYDIIIT HDDESYDSLDGYTKETIRLNYWIDCPGTGEDPGWIAYFFTRAGKIGSYNFDVFTRTTQIT
Specific function: Unknown
COG id: COG4745
COG function: function code O; Predicted membrane-bound mannosyltransferase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 62008; Mature: 62008
Theoretical pI: Translated: 6.02; Mature: 6.02
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLPFIQNIKNRIRVEHVIFAILILAIILRFAFLDLKLFHHDEAIHAWFSYQLLTTGNYLY CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHEEEEECCCEEE DPVYHGPFLYYITASMFALFGDSDLVGRILPCIAGCALIPLVYWLYRLRYLTGKVAVIAA CCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LFLAIAPELVYFSRFLRNDIFVAFFSLLLVVAFLAWLDKGKWYYLALAAVAAALGMCSKE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCC NMPLILVTFGVFFLYLLWTRKITLPEKWIRDLIIAVIIFAGIICTLYSSFWAHPEMILQA CCCEEHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHC GPMAIEHWIAMHNEQRIAGPPVFYLLMFILYELPILILAAAGIVIFLVTGKKRSSEKEDE CCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCHHH LENPEEQEQTEPKKKFSFAALFRRPEAPVFVDRKKEFIRFAVYWTLIACLTYAYIGEKVP CCCCCHHHHCCHHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCC WLSLHQLVPMIFVAAFALTFTGKYWKILLVVCAVLLFATTCYVAYTPTDIAEPIIQVQNS HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHEEECCHHHHHHHHHCCCC EDLVPLMAAIDASDRVALATDQAWPFMWYYRGDAWDRFTYYGGLKDSSTLLSGDYDIIIT CCHHHHHHHCCCCCCEEEEECCCCCEEEEEECCCCCCCEEECCCCCCCCEECCCEEEEEE HDDESYDSLDGYTKETIRLNYWIDCPGTGEDPGWIAYFFTRAGKIGSYNFDVFTRTTQIT CCCCCCHHCCCCCCCEEEEEEEEECCCCCCCCCEEEEEEHHCCCCCCCCEEEEEEEEECC >Mature Secondary Structure MLPFIQNIKNRIRVEHVIFAILILAIILRFAFLDLKLFHHDEAIHAWFSYQLLTTGNYLY CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHEEEEECCCEEE DPVYHGPFLYYITASMFALFGDSDLVGRILPCIAGCALIPLVYWLYRLRYLTGKVAVIAA CCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LFLAIAPELVYFSRFLRNDIFVAFFSLLLVVAFLAWLDKGKWYYLALAAVAAALGMCSKE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCC NMPLILVTFGVFFLYLLWTRKITLPEKWIRDLIIAVIIFAGIICTLYSSFWAHPEMILQA CCCEEHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHC GPMAIEHWIAMHNEQRIAGPPVFYLLMFILYELPILILAAAGIVIFLVTGKKRSSEKEDE CCHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCCHHH LENPEEQEQTEPKKKFSFAALFRRPEAPVFVDRKKEFIRFAVYWTLIACLTYAYIGEKVP CCCCCHHHHCCHHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCC WLSLHQLVPMIFVAAFALTFTGKYWKILLVVCAVLLFATTCYVAYTPTDIAEPIIQVQNS HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHEEECCHHHHHHHHHCCCC EDLVPLMAAIDASDRVALATDQAWPFMWYYRGDAWDRFTYYGGLKDSSTLLSGDYDIIIT CCHHHHHHHCCCCCCEEEEECCCCCEEEEEECCCCCCCEEECCCCCCCCEECCCEEEEEE HDDESYDSLDGYTKETIRLNYWIDCPGTGEDPGWIAYFFTRAGKIGSYNFDVFTRTTQIT CCCCCCHHCCCCCCCEEEEEEEEECCCCCCCCCEEEEEEHHCCCCCCCCEEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA