| Definition | Methanocorpusculum labreanum Z chromosome, complete genome. |
|---|---|
| Accession | NC_008942 |
| Length | 1,804,962 |
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The map label for this gene is yiaH [C]
Identifier: 124486246
GI number: 124486246
Start: 1458662
End: 1459801
Strand: Reverse
Name: yiaH [C]
Synonym: Mlab_1429
Alternate gene names: 124486246
Gene position: 1459801-1458662 (Counterclockwise)
Preceding gene: 124486247
Following gene: 124486239
Centisome position: 80.88
GC content: 30.88
Gene sequence:
>1140_bases ATGGTTAGTGGTGGGAAGCATATTCTGGAAATCGATTTTTTACGTGGATTTGCAATATTAGCAGTTATTGCCATTCACAC TACTGCTGCATTTACCGATGTCCCATATATTGACTCGCTAGTAATTACGAATATAGTAATCGATGTTTTTTCGCAGTTTG CTGTACCACTGTTTATATTTATTTCTGGTTTTGTTCTCTATTTAAAGTATAATGGTAAGTATTCATTGAAACATTTTTAT AAAAATCGATTTTTACGAATAATCCCACCATATTTAATATTTACAACAATTTACTTATTTTATCTTCCTCTTGGGTATGC CCTTGTCTATGGAAATGTACCGGTTTATCCATCCATATTGGAAATAGTATCCGCTTTTCTTTTTGCAGGTGGATATTTTC ATCTATGGTTCTTTTTAATAATAATTGAATTGTATTTATTCTATCCATTACTAGAGAAAATATATGCAGTATTAGCTTCT CGTGATTTTGAATGGGTATTTTTGTTGGTGGCCTTTTTTCTTCAGATAGGATGGAATATAGTTAGTTCATTTTTCACAGT ATCGCTGTTTGGCAATGAGATGTATATGATGAATAAGGTGTTATTTTGTCAGATATTTTATTTCGCACTTGGAATGTCTG TGTGCAAACATTATGTTCAAATAAAATTATTTTTTATGGAAAAATGGATTACTAATCTAACAAGTCATCGGATATCATTG TATGGGTTATTATTGACTCTCATATCTCTCCTTACGGCCCTATCAAGTTATGGCTTAATATTAGGTCTAAAAAAATATGG AACTTATCTCTTAATACCTCCAAATTATTTTATTCCCTATACTATTATTCAACCTTTTGCATATGTTTTGACATTTATTG TATTATTTATTATTAGTACAGTACTTGTTCATGCAGGAACATGTAATATTCTCTCAATAATTGGAACGTATTCATTTGGG ATTTACTTGATTCATCCATTAATTCAGGGTATCTTAGGTCGAACTTTCAGTGTGGTACTTAACCTGGGGGCTACGGATGT CCTTTATTATCCTTTGATGTTTAGCTTAACCCTCTTGCTTAGTGTTATTATTATACATATTTTACATAAATTTCCATGGA GTAAATATGTTATAGGGTAG
Upstream 100 bases:
>100_bases GAACTAATAGAGTTGTACATTATGAATATATTATAGGGATATTTGAGATATAAGATTGGAAAATTATTAATGAAGATATC CTTTAATTTTGTGAATAATC
Downstream 100 bases:
>100_bases ATTAAATAATATTCTGTCTATCTTATGGCTACTCTTTATTAAATGGAAATATTTTCTATTTTATTTTTATTTGAAGGCAT AATCTTCTTAGAAATAGGAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 379; Mature: 379
Protein sequence:
>379_residues MVSGGKHILEIDFLRGFAILAVIAIHTTAAFTDVPYIDSLVITNIVIDVFSQFAVPLFIFISGFVLYLKYNGKYSLKHFY KNRFLRIIPPYLIFTTIYLFYLPLGYALVYGNVPVYPSILEIVSAFLFAGGYFHLWFFLIIIELYLFYPLLEKIYAVLAS RDFEWVFLLVAFFLQIGWNIVSSFFTVSLFGNEMYMMNKVLFCQIFYFALGMSVCKHYVQIKLFFMEKWITNLTSHRISL YGLLLTLISLLTALSSYGLILGLKKYGTYLLIPPNYFIPYTIIQPFAYVLTFIVLFIISTVLVHAGTCNILSIIGTYSFG IYLIHPLIQGILGRTFSVVLNLGATDVLYYPLMFSLTLLLSVIIIHILHKFPWSKYVIG
Sequences:
>Translated_379_residues MVSGGKHILEIDFLRGFAILAVIAIHTTAAFTDVPYIDSLVITNIVIDVFSQFAVPLFIFISGFVLYLKYNGKYSLKHFY KNRFLRIIPPYLIFTTIYLFYLPLGYALVYGNVPVYPSILEIVSAFLFAGGYFHLWFFLIIIELYLFYPLLEKIYAVLAS RDFEWVFLLVAFFLQIGWNIVSSFFTVSLFGNEMYMMNKVLFCQIFYFALGMSVCKHYVQIKLFFMEKWITNLTSHRISL YGLLLTLISLLTALSSYGLILGLKKYGTYLLIPPNYFIPYTIIQPFAYVLTFIVLFIISTVLVHAGTCNILSIIGTYSFG IYLIHPLIQGILGRTFSVVLNLGATDVLYYPLMFSLTLLLSVIIIHILHKFPWSKYVIG >Mature_379_residues MVSGGKHILEIDFLRGFAILAVIAIHTTAAFTDVPYIDSLVITNIVIDVFSQFAVPLFIFISGFVLYLKYNGKYSLKHFY KNRFLRIIPPYLIFTTIYLFYLPLGYALVYGNVPVYPSILEIVSAFLFAGGYFHLWFFLIIIELYLFYPLLEKIYAVLAS RDFEWVFLLVAFFLQIGWNIVSSFFTVSLFGNEMYMMNKVLFCQIFYFALGMSVCKHYVQIKLFFMEKWITNLTSHRISL YGLLLTLISLLTALSSYGLILGLKKYGTYLLIPPNYFIPYTIIQPFAYVLTFIVLFIISTVLVHAGTCNILSIIGTYSFG IYLIHPLIQGILGRTFSVVLNLGATDVLYYPLMFSLTLLLSVIIIHILHKFPWSKYVIG
Specific function: Unknown
COG id: COG3274
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Integral Membrane Protein. Inner Membrane [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 43572; Mature: 43572
Theoretical pI: Translated: 9.20; Mature: 9.20
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVSGGKHILEIDFLRGFAILAVIAIHTTAAFTDVPYIDSLVITNIVIDVFSQFAVPLFIF CCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH ISGFVLYLKYNGKYSLKHFYKNRFLRIIPPYLIFTTIYLFYLPLGYALVYGNVPVYPSIL HHHHHEEEEECCCHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH EIVSAFLFAGGYFHLWFFLIIIELYLFYPLLEKIYAVLASRDFEWVFLLVAFFLQIGWNI HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH VSSFFTVSLFGNEMYMMNKVLFCQIFYFALGMSVCKHYVQIKLFFMEKWITNLTSHRISL HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YGLLLTLISLLTALSSYGLILGLKKYGTYLLIPPNYFIPYTIIQPFAYVLTFIVLFIIST HHHHHHHHHHHHHHHHHHHHEEHHHHCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHH VLVHAGTCNILSIIGTYSFGIYLIHPLIQGILGRTFSVVLNLGATDVLYYPLMFSLTLLL HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH SVIIIHILHKFPWSKYVIG HHHHHHHHHHCCCCCCCCC >Mature Secondary Structure MVSGGKHILEIDFLRGFAILAVIAIHTTAAFTDVPYIDSLVITNIVIDVFSQFAVPLFIF CCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH ISGFVLYLKYNGKYSLKHFYKNRFLRIIPPYLIFTTIYLFYLPLGYALVYGNVPVYPSIL HHHHHEEEEECCCHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHH EIVSAFLFAGGYFHLWFFLIIIELYLFYPLLEKIYAVLASRDFEWVFLLVAFFLQIGWNI HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH VSSFFTVSLFGNEMYMMNKVLFCQIFYFALGMSVCKHYVQIKLFFMEKWITNLTSHRISL HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH YGLLLTLISLLTALSSYGLILGLKKYGTYLLIPPNYFIPYTIIQPFAYVLTFIVLFIIST HHHHHHHHHHHHHHHHHHHHEEHHHHCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHH VLVHAGTCNILSIIGTYSFGIYLIHPLIQGILGRTFSVVLNLGATDVLYYPLMFSLTLLL HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH SVIIIHILHKFPWSKYVIG HHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA