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The map label for this gene is rnp3 [H]

Identifier: 124486161

GI number: 124486161

Start: 1367129

End: 1367773

Strand: Reverse

Name: rnp3 [H]

Synonym: Mlab_1343

Alternate gene names: 124486161

Gene position: 1367773-1367129 (Counterclockwise)

Preceding gene: 124486162

Following gene: 124486160

Centisome position: 75.78

GC content: 55.35

Gene sequence:

>645_bases
ATGATAACAGACGCATGCGTGTATGCGAATGACTCGTCAAACACCACGCTTCGTCGCTTTGCTCTGACCGCCGCTTCCTG
CGGTTTTTCCCGGATCATTGCCTGTGATTCCTCAGAGGACATCTCCGAGTATGCCGGCGTTTCGATCCTGAAAGGAAAAA
TGATCGGCAGAGTGACCGGAAAGGCATTCCTCGATGCCGTCAGAAAAACTCCTGCGGGGACGGTCGTGTTCGTGCAGGCC
GGCGAAAACGGTTTCAATCGTACGGCGATCACCACAAAAGGCGTACATCTTCTGACCGGCATTGCGGACCTTCCAAAAGG
AGGATTCGATCACATCACGGCAAAGATGGCGGCGCAGCAGAACACCGGAGTCGTTCTCGACCTTTCCCGGATCATCGATC
CAAAGACCCGGCGGGCGGCTCTTTCCCGGTATGCCGAGATCCTCGCCTTCCATCGGAAGTACCGTTTCCCGCTTCTTTTG
GCCAGCGGTGCATCCGATAGTCTTGGGCAGAGAAACATCCAGGAGGTCACTGCGCTAGTCGCCCTCTTCGGCATGACGAA
GGAAGAGACGAACGCCGCTCTTTCCTCCCTTGACGGAATCCTCTATCCGAAAAAGACGGTCGAGATCGTGGAGGAGAAAT
CATGA

Upstream 100 bases:

>100_bases
GCGGTCTCCACAACCGCGGAACCGGAACTGAAAAGTGCCGGCCAAGCCTTACCTCCCACAAGAATCAGGGTAAATAACCC
GGTTCTCATTTTTTCTCATT

Downstream 100 bases:

>100_bases
GCGTTCTTCCGCCGACCCTTCGCGAAAACCGGCGCTACGTCCTGTTTCGCATCATCACCCTGGTGAACCCGACCCAAAAA
GAGGTGTACCGGTCCATGGC

Product: hypothetical protein

Products: NA

Alternate protein names: RNase P component 3 [H]

Number of amino acids: Translated: 214; Mature: 214

Protein sequence:

>214_residues
MITDACVYANDSSNTTLRRFALTAASCGFSRIIACDSSEDISEYAGVSILKGKMIGRVTGKAFLDAVRKTPAGTVVFVQA
GENGFNRTAITTKGVHLLTGIADLPKGGFDHITAKMAAQQNTGVVLDLSRIIDPKTRRAALSRYAEILAFHRKYRFPLLL
ASGASDSLGQRNIQEVTALVALFGMTKEETNAALSSLDGILYPKKTVEIVEEKS

Sequences:

>Translated_214_residues
MITDACVYANDSSNTTLRRFALTAASCGFSRIIACDSSEDISEYAGVSILKGKMIGRVTGKAFLDAVRKTPAGTVVFVQA
GENGFNRTAITTKGVHLLTGIADLPKGGFDHITAKMAAQQNTGVVLDLSRIIDPKTRRAALSRYAEILAFHRKYRFPLLL
ASGASDSLGQRNIQEVTALVALFGMTKEETNAALSSLDGILYPKKTVEIVEEKS
>Mature_214_residues
MITDACVYANDSSNTTLRRFALTAASCGFSRIIACDSSEDISEYAGVSILKGKMIGRVTGKAFLDAVRKTPAGTVVFVQA
GENGFNRTAITTKGVHLLTGIADLPKGGFDHITAKMAAQQNTGVVLDLSRIIDPKTRRAALSRYAEILAFHRKYRFPLLL
ASGASDSLGQRNIQEVTALVALFGMTKEETNAALSSLDGILYPKKTVEIVEEKS

Specific function: Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends [H]

COG id: COG1603

COG function: function code J; RNase P/RNase MRP subunit p30

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the eukaryotic/archaeal RNase P protein component 3 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016195
- InterPro:   IPR002738 [H]

Pfam domain/function: PF01876 RNase_P_p30 [H]

EC number: =3.1.26.5 [H]

Molecular weight: Translated: 22963; Mature: 22963

Theoretical pI: Translated: 9.44; Mature: 9.44

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITDACVYANDSSNTTLRRFALTAASCGFSRIIACDSSEDISEYAGVSILKGKMIGRVTG
CCCCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEECCCCCHHHHCCCHHHHCHHHHHHHH
KAFLDAVRKTPAGTVVFVQAGENGFNRTAITTKGVHLLTGIADLPKGGFDHITAKMAAQQ
HHHHHHHHCCCCCEEEEEEECCCCCCCCEEEECCHHHHHHHHHCCCCCHHHHHHHHHHCC
NTGVVLDLSRIIDPKTRRAALSRYAEILAFHRKYRFPLLLASGASDSLGQRNIQEVTALV
CCCEEEEHHHHCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHH
ALFGMTKEETNAALSSLDGILYPKKTVEIVEEKS
HHHCCCHHHHHHHHHHHCCCCCCHHHHHHHCCCC
>Mature Secondary Structure
MITDACVYANDSSNTTLRRFALTAASCGFSRIIACDSSEDISEYAGVSILKGKMIGRVTG
CCCCEEEEECCCCCCHHHHHHHHHHHCCCEEEEEECCCCCHHHHCCCHHHHCHHHHHHHH
KAFLDAVRKTPAGTVVFVQAGENGFNRTAITTKGVHLLTGIADLPKGGFDHITAKMAAQQ
HHHHHHHHCCCCCEEEEEEECCCCCCCCEEEECCHHHHHHHHHCCCCCHHHHHHHHHHCC
NTGVVLDLSRIIDPKTRRAALSRYAEILAFHRKYRFPLLLASGASDSLGQRNIQEVTALV
CCCEEEEHHHHCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHH
ALFGMTKEETNAALSSLDGILYPKKTVEIVEEKS
HHHCCCHHHHHHHHHHHCCCCCCHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA