Click here to switch to the map view.

The map label for this gene is tadA [H]

Identifier: 124486136

GI number: 124486136

Start: 1343110

End: 1343565

Strand: Reverse

Name: tadA [H]

Synonym: Mlab_1318

Alternate gene names: 124486136

Gene position: 1343565-1343110 (Counterclockwise)

Preceding gene: 124486138

Following gene: 124486135

Centisome position: 74.44

GC content: 51.75

Gene sequence:

>456_bases
ATGACGGAATCGATGGATCAGTATATGAGGGCCGCGTATGAAGAGGCGCTTGCCGGGCGAAACGAAGGAGGGATCCCGAT
CGGCGCCGTTCTCGTTCGAAACGGAGAAATTGTAGGAAGGGGACATAACCAAAGGGTCCAGAAGGGGAACCCTATCCTGC
ACGGGGAGATGGATGCTCTCTCGAATTCGGGCCGGCATCCGGCATCTTTCTACAAAGAATGCACCCTGTACACGACCCTT
GCGCCATGCATCATGTGTTCTGGTGCGATTCTGCTGTATAAGATCCCGGAAGTCGTTGTAGGGGAAGACGTCAATTATCC
TGGCGAAACTGCATTCCTGCGTTCACGCGGGGTCAAGGTGACGATCCTAAATAATGAAGAGATCATTCGTATGATGAAAA
CGTTTATCGAGGAAAATCCAACCGTCTGGAACGAGGATATCTCGGAAGAGGTCTGA

Upstream 100 bases:

>100_bases
AGCAGGGCTGATTACGTATGGACTAGCCGGCGGTTTCCCGGCCGAAAACCGTAGTATTATTATTCCCGCAGGTCCATCTC
TGGATTATCGGTGAACTAAC

Downstream 100 bases:

>100_bases
GAGATTTTCACGTCGGTTTTCTTAACAGTGAAGATGCCTCTCCTTCATAATCGGACAGACCTACTTGTCAACTTGTCAGC
TACTTGTCGAATCGTTTGAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 151; Mature: 150

Protein sequence:

>151_residues
MTESMDQYMRAAYEEALAGRNEGGIPIGAVLVRNGEIVGRGHNQRVQKGNPILHGEMDALSNSGRHPASFYKECTLYTTL
APCIMCSGAILLYKIPEVVVGEDVNYPGETAFLRSRGVKVTILNNEEIIRMMKTFIEENPTVWNEDISEEV

Sequences:

>Translated_151_residues
MTESMDQYMRAAYEEALAGRNEGGIPIGAVLVRNGEIVGRGHNQRVQKGNPILHGEMDALSNSGRHPASFYKECTLYTTL
APCIMCSGAILLYKIPEVVVGEDVNYPGETAFLRSRGVKVTILNNEEIIRMMKTFIEENPTVWNEDISEEV
>Mature_150_residues
TESMDQYMRAAYEEALAGRNEGGIPIGAVLVRNGEIVGRGHNQRVQKGNPILHGEMDALSNSGRHPASFYKECTLYTTLA
PCIMCSGAILLYKIPEVVVGEDVNYPGETAFLRSRGVKVTILNNEEIIRMMKTFIEENPTVWNEDISEEV

Specific function: Deaminates adenosine-34 to inosine in tRNA-Arg2 [H]

COG id: COG0590

COG function: function code FJ; Cytosine/adenosine deaminases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytidine and deoxycytidylate deaminase family [H]

Homologues:

Organism=Homo sapiens, GI124107608, Length=158, Percent_Identity=32.2784810126582, Blast_Score=77, Evalue=5e-15,
Organism=Escherichia coli, GI145693172, Length=99, Percent_Identity=37.3737373737374, Blast_Score=70, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17554608, Length=97, Percent_Identity=37.1134020618557, Blast_Score=73, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI17541138, Length=150, Percent_Identity=32.6666666666667, Blast_Score=70, Evalue=6e-13,
Organism=Saccharomyces cerevisiae, GI6325319, Length=153, Percent_Identity=49.6732026143791, Blast_Score=154, Evalue=4e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016192
- InterPro:   IPR002125
- InterPro:   IPR016193 [H]

Pfam domain/function: PF00383 dCMP_cyt_deam_1 [H]

EC number: NA

Molecular weight: Translated: 16778; Mature: 16647

Theoretical pI: Translated: 4.70; Mature: 4.70

Prosite motif: PS00903 CYT_DCMP_DEAMINASES

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
6.6 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTESMDQYMRAAYEEALAGRNEGGIPIGAVLVRNGEIVGRGHNQRVQKGNPILHGEMDAL
CCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCEEEECCCCCCHHCCCCEEECCHHHH
SNSGRHPASFYKECTLYTTLAPCIMCSGAILLYKIPEVVVGEDVNYPGETAFLRSRGVKV
CCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHEECCCCCCCCCHHHHHHCCCEE
TILNNEEIIRMMKTFIEENPTVWNEDISEEV
EEECCHHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure 
TESMDQYMRAAYEEALAGRNEGGIPIGAVLVRNGEIVGRGHNQRVQKGNPILHGEMDAL
CCHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCEEEECCCCCCHHCCCCEEECCHHHH
SNSGRHPASFYKECTLYTTLAPCIMCSGAILLYKIPEVVVGEDVNYPGETAFLRSRGVKV
CCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHEECCCCCCCCCHHHHHHCCCEE
TILNNEEIIRMMKTFIEENPTVWNEDISEEV
EEECCHHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11296296 [H]