| Definition | Methanocorpusculum labreanum Z chromosome, complete genome. |
|---|---|
| Accession | NC_008942 |
| Length | 1,804,962 |
Click here to switch to the map view.
The map label for this gene is 124486106
Identifier: 124486106
GI number: 124486106
Start: 1311879
End: 1313378
Strand: Reverse
Name: 124486106
Synonym: Mlab_1286
Alternate gene names: NA
Gene position: 1313378-1311879 (Counterclockwise)
Preceding gene: 124486107
Following gene: 124486105
Centisome position: 72.76
GC content: 52.27
Gene sequence:
>1500_bases ATGTCCGAACTCTACAAAAAAATGATTGACGAGGCAATGGCTGCACAGCATGCCGACGTCAGCGTTCTCAAAGCGAGACG TGGAAAGCATTTCACGCTCAAGGATGCCCGCCCCTATGTTGAGGCGGTGGAAAAGATGACTGTTGGTCCAAAACAGAGCG CCGCGGTCATTAATCTGCACAAAGAATCCGTGAAAACGCACTTCAATGTTCTCTCGGGCTTGACCCGTCACGTCAAACCG GAAGACGATCCCTTTGTCGAACATTATCAGACACCCGTCATTTTGGAAATTCTCCGTGATCAGGATCCAAAGTTTGCAAA GAGTCTGGAGATCTTTGCCGACTCGATCAAAACCCACGAGGCAATCATCGGGAAGGAAGCTGCACGCTGTTATGCAGGGT TCTACGGACCAACTTGTGTCGTCGACTTTGCTTTGATGCCGGGTTCAACCAGCAATGTCGTCAACCAGGTGCTCACGAAA ACCGACATCCCGGTCGCTCACAAACAGGCGATTCTCGCTGCCAAATCCTGGGGTATGAACACCTCGTACGGTATCGGCGA TCTGTTTGCAAAACGTATGGAAGCAGGTGATTCCCTTGCCGAAGCCTCGAGAAAGGAGGTTCGTCAGCTTCAGGACCTCT ACCGCAATCCGGTAGAAGCACAGGCCAAGCTCATGCAGAAAGCGGGTATGAAATCCTTCTCCGCCAGGAGATATATGGAG AACTACCGCAAAGGTATGGAAAAGGCGGTCAAGGCTGCGGTTGATGACGGGGTCCATTATGGAAACATCGCCACGATCCC TGCATACTGTGTAGGGGATGTATCCCACCACATTTCCCAGTCCACCTACAACATGTGCAAGGATGATGTGATCATGGCAA CGATCGAGGCCGTAACTAATGTTATTGAAAAAACGCTTCTTGCCGCCGTTCCAAGCATTAAGACCCCGTATCAGCTGTTG AATGTCGCAACCGGCGCCTCGGCCGCGGCGACCGAGTATCTTCTGGAACTCGATGCATTCAATGCTCCGATGATCGTTGA TCTTCTGACGAAGAGATACCACAACCTTGTGATGATCAAACCGACCAGAGGAGCTGCTGCAGAACTGCACAACTGCGATT TCATGGATATGATCTACCGCGGCTGGAAGATCCTTGACAAAGCCGAGAGAGTGAAGAACGGATCGGGCCAGCCGCTTGTT CCGAAGATCGACGGCATTCCAATCGATCTCTCACCCATCCACGAGAATGAGATCCTGATGAATCCCCAGCGCTATGCATA CCCCGCATGTGCCATCACCGTTCGTGCCTCCGCCCTTATGCGGCTTGCCGACTATCCGTGTCTCCTGACCAGCGAACCGA TCACCGCAACCATGATGACAAACATCATTGCACTCGACAAAAAGACCGTTGCCGCGCCGGTACGTGCCTGTAAGAGCTGT GCAACTGCGTGTCTTGTCGGTTCACGCCACCAGTATTGCCAGTACCGAGAGGCTGTCTAA
Upstream 100 bases:
>100_bases ATATTCCCCTAACTGCGATATTTCTTGGCATAAACTCCCATTATACATACCTTTATCATGTCTGGGAGAAATCAATAAAT TATACCTTTTGGAGAAAAAA
Downstream 100 bases:
>100_bases ATGAAATGTTACGTATGTGAGCAGGAGGGGGTTGACCGGGACGCAACCGGTGTCTGTATCGTATGCGGCATGGGTCTCTG CACGAAACATATGGTTCGTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 499; Mature: 498
Protein sequence:
>499_residues MSELYKKMIDEAMAAQHADVSVLKARRGKHFTLKDARPYVEAVEKMTVGPKQSAAVINLHKESVKTHFNVLSGLTRHVKP EDDPFVEHYQTPVILEILRDQDPKFAKSLEIFADSIKTHEAIIGKEAARCYAGFYGPTCVVDFALMPGSTSNVVNQVLTK TDIPVAHKQAILAAKSWGMNTSYGIGDLFAKRMEAGDSLAEASRKEVRQLQDLYRNPVEAQAKLMQKAGMKSFSARRYME NYRKGMEKAVKAAVDDGVHYGNIATIPAYCVGDVSHHISQSTYNMCKDDVIMATIEAVTNVIEKTLLAAVPSIKTPYQLL NVATGASAAATEYLLELDAFNAPMIVDLLTKRYHNLVMIKPTRGAAAELHNCDFMDMIYRGWKILDKAERVKNGSGQPLV PKIDGIPIDLSPIHENEILMNPQRYAYPACAITVRASALMRLADYPCLLTSEPITATMMTNIIALDKKTVAAPVRACKSC ATACLVGSRHQYCQYREAV
Sequences:
>Translated_499_residues MSELYKKMIDEAMAAQHADVSVLKARRGKHFTLKDARPYVEAVEKMTVGPKQSAAVINLHKESVKTHFNVLSGLTRHVKP EDDPFVEHYQTPVILEILRDQDPKFAKSLEIFADSIKTHEAIIGKEAARCYAGFYGPTCVVDFALMPGSTSNVVNQVLTK TDIPVAHKQAILAAKSWGMNTSYGIGDLFAKRMEAGDSLAEASRKEVRQLQDLYRNPVEAQAKLMQKAGMKSFSARRYME NYRKGMEKAVKAAVDDGVHYGNIATIPAYCVGDVSHHISQSTYNMCKDDVIMATIEAVTNVIEKTLLAAVPSIKTPYQLL NVATGASAAATEYLLELDAFNAPMIVDLLTKRYHNLVMIKPTRGAAAELHNCDFMDMIYRGWKILDKAERVKNGSGQPLV PKIDGIPIDLSPIHENEILMNPQRYAYPACAITVRASALMRLADYPCLLTSEPITATMMTNIIALDKKTVAAPVRACKSC ATACLVGSRHQYCQYREAV >Mature_498_residues SELYKKMIDEAMAAQHADVSVLKARRGKHFTLKDARPYVEAVEKMTVGPKQSAAVINLHKESVKTHFNVLSGLTRHVKPE DDPFVEHYQTPVILEILRDQDPKFAKSLEIFADSIKTHEAIIGKEAARCYAGFYGPTCVVDFALMPGSTSNVVNQVLTKT DIPVAHKQAILAAKSWGMNTSYGIGDLFAKRMEAGDSLAEASRKEVRQLQDLYRNPVEAQAKLMQKAGMKSFSARRYMEN YRKGMEKAVKAAVDDGVHYGNIATIPAYCVGDVSHHISQSTYNMCKDDVIMATIEAVTNVIEKTLLAAVPSIKTPYQLLN VATGASAAATEYLLELDAFNAPMIVDLLTKRYHNLVMIKPTRGAAAELHNCDFMDMIYRGWKILDKAERVKNGSGQPLVP KIDGIPIDLSPIHENEILMNPQRYAYPACAITVRASALMRLADYPCLLTSEPITATMMTNIIALDKKTVAAPVRACKSCA TACLVGSRHQYCQYREAV
Specific function: Unknown
COG id: COG4883
COG function: function code S; Uncharacterized protein conserved in archaea
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 55135; Mature: 55004
Theoretical pI: Translated: 8.44; Mature: 8.44
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 4.2 %Met (Translated Protein) 6.4 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 4.0 %Met (Mature Protein) 6.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSELYKKMIDEAMAAQHADVSVLKARRGKHFTLKDARPYVEAVEKMTVGPKQSAAVINLH CHHHHHHHHHHHHHHHCCCHHHHHHHCCCCEEECCCCHHHHHHHHHCCCCCCCCEEEEEH KESVKTHFNVLSGLTRHVKPEDDPFVEHYQTPVILEILRDQDPKFAKSLEIFADSIKTHE HHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHH AIIGKEAARCYAGFYGPTCVVDFALMPGSTSNVVNQVLTKTDIPVAHKQAILAAKSWGMN HHHHHHHHHHHHCCCCCHHHHEEHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCC TSYGIGDLFAKRMEAGDSLAEASRKEVRQLQDLYRNPVEAQAKLMQKAGMKSFSARRYME CCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHH NYRKGMEKAVKAAVDDGVHYGNIATIPAYCVGDVSHHISQSTYNMCKDDVIMATIEAVTN HHHHHHHHHHHHHHHCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VIEKTLLAAVPSIKTPYQLLNVATGASAAATEYLLELDAFNAPMIVDLLTKRYHNLVMIK HHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCEEEEE PTRGAAAELHNCDFMDMIYRGWKILDKAERVKNGSGQPLVPKIDGIPIDLSPIHENEILM CCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEE NPQRYAYPACAITVRASALMRLADYPCLLTSEPITATMMTNIIALDKKTVAAPVRACKSC CCHHHCCCHHHHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHCCHHHHHHHHHHHHH ATACLVGSRHQYCQYREAV HHHHHHCCHHHHHHHHHCC >Mature Secondary Structure SELYKKMIDEAMAAQHADVSVLKARRGKHFTLKDARPYVEAVEKMTVGPKQSAAVINLH HHHHHHHHHHHHHHHCCCHHHHHHHCCCCEEECCCCHHHHHHHHHCCCCCCCCEEEEEH KESVKTHFNVLSGLTRHVKPEDDPFVEHYQTPVILEILRDQDPKFAKSLEIFADSIKTHE HHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHH AIIGKEAARCYAGFYGPTCVVDFALMPGSTSNVVNQVLTKTDIPVAHKQAILAAKSWGMN HHHHHHHHHHHHCCCCCHHHHEEHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCC TSYGIGDLFAKRMEAGDSLAEASRKEVRQLQDLYRNPVEAQAKLMQKAGMKSFSARRYME CCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHH NYRKGMEKAVKAAVDDGVHYGNIATIPAYCVGDVSHHISQSTYNMCKDDVIMATIEAVTN HHHHHHHHHHHHHHHCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH VIEKTLLAAVPSIKTPYQLLNVATGASAAATEYLLELDAFNAPMIVDLLTKRYHNLVMIK HHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHCCEEEEE PTRGAAAELHNCDFMDMIYRGWKILDKAERVKNGSGQPLVPKIDGIPIDLSPIHENEILM CCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEE NPQRYAYPACAITVRASALMRLADYPCLLTSEPITATMMTNIIALDKKTVAAPVRACKSC CCHHHCCCHHHHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHCCHHHHHHHHHHHHH ATACLVGSRHQYCQYREAV HHHHHHCCHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA