| Definition | Methanocorpusculum labreanum Z chromosome, complete genome. |
|---|---|
| Accession | NC_008942 |
| Length | 1,804,962 |
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The map label for this gene is 124486035
Identifier: 124486035
GI number: 124486035
Start: 1245879
End: 1246670
Strand: Reverse
Name: 124486035
Synonym: Mlab_1215
Alternate gene names: NA
Gene position: 1246670-1245879 (Counterclockwise)
Preceding gene: 124486046
Following gene: 124486023
Centisome position: 69.07
GC content: 53.79
Gene sequence:
>792_bases ATGAATACACCGGGGAGAAAAACCGTTTCGGTTTTGATTTTGGCTCTTTTGATTGTCGGATTCGTTCTGACGGCCGGGTG TGTCGGTCTGGTGAATCCGACGCCAAACGAGGTCATGATCCGCGGGAATCTGATCTCGGTCGATCCGACGTATGTCGACG GGACGTTTATCTGGAAACTTCTGCTGGATCCAAACGGCTATGAACCCGAGATGGTCGCCGCAGTGGACGGGTATCTGATC CCGCAGAATCCGCTGATCGAACTCGGTGCGGGGATCGGCTCGCTTTCGGCATATATGAACGATAAGCTGACGATGTCGGT GAATCAGGTTTCAGTCGAACCGAATCCGTATCTGATCCCGTCTCTGAACCTGACGAAACAGAATAACGATCTCGGCGTGA CGTTCGTGCAGAAGACGATCGGGTACGGATCGAACACGGTCGCGATCTCGGTGACGTCGGATATCACAAACAACCGGATC GTGCGGCCGGACGGCGTACTCGTGAAGTCGGTCGAAGTGGATACGACGACCGTTCAGAAGCTTGCGCAGAATGCAGGGTT CACCTCGAATATAACGCTTGTCATGAATATCGTCGGATACGAGCATGCCGTCGTTCAGTATGAGGCCGAGTTCCTGAGCC AGAACGTCAGCACGGTGATCGCGGCGGTATATACCGACGGCAAGAACACGCCGGATTCGTTTGCGGAAAAGATGGAGCTG ATCGGCTTTACGGAACAGTCCCGGGGAATGGCAGCCGAAAAAGGCTATGTGGTGATGGTCTTCACCAAATAA
Upstream 100 bases:
>100_bases ATGCGGGAGCGGCAAAAAAAGACGGACAGCGGGATGGGTTTCCTCGATTTTTCCCGGATCAAACAATATCTACAAATAGA TTGCCCTCCGAAAGTTTACT
Downstream 100 bases:
>100_bases AAAAAGGGGTTTACCCCACGACCATACTATTTTCTTCGGCGATCTCGATGAACGAATCAGCGAGATACTCTGCCTGTGTT TTCGTTAGTCCGTAGGTGTT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 263; Mature: 263
Protein sequence:
>263_residues MNTPGRKTVSVLILALLIVGFVLTAGCVGLVNPTPNEVMIRGNLISVDPTYVDGTFIWKLLLDPNGYEPEMVAAVDGYLI PQNPLIELGAGIGSLSAYMNDKLTMSVNQVSVEPNPYLIPSLNLTKQNNDLGVTFVQKTIGYGSNTVAISVTSDITNNRI VRPDGVLVKSVEVDTTTVQKLAQNAGFTSNITLVMNIVGYEHAVVQYEAEFLSQNVSTVIAAVYTDGKNTPDSFAEKMEL IGFTEQSRGMAAEKGYVVMVFTK
Sequences:
>Translated_263_residues MNTPGRKTVSVLILALLIVGFVLTAGCVGLVNPTPNEVMIRGNLISVDPTYVDGTFIWKLLLDPNGYEPEMVAAVDGYLI PQNPLIELGAGIGSLSAYMNDKLTMSVNQVSVEPNPYLIPSLNLTKQNNDLGVTFVQKTIGYGSNTVAISVTSDITNNRI VRPDGVLVKSVEVDTTTVQKLAQNAGFTSNITLVMNIVGYEHAVVQYEAEFLSQNVSTVIAAVYTDGKNTPDSFAEKMEL IGFTEQSRGMAAEKGYVVMVFTK >Mature_263_residues MNTPGRKTVSVLILALLIVGFVLTAGCVGLVNPTPNEVMIRGNLISVDPTYVDGTFIWKLLLDPNGYEPEMVAAVDGYLI PQNPLIELGAGIGSLSAYMNDKLTMSVNQVSVEPNPYLIPSLNLTKQNNDLGVTFVQKTIGYGSNTVAISVTSDITNNRI VRPDGVLVKSVEVDTTTVQKLAQNAGFTSNITLVMNIVGYEHAVVQYEAEFLSQNVSTVIAAVYTDGKNTPDSFAEKMEL IGFTEQSRGMAAEKGYVVMVFTK
Specific function: Unknown
COG id: COG0500
COG function: function code QR; SAM-dependent methyltransferases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28332; Mature: 28332
Theoretical pI: Translated: 4.41; Mature: 4.41
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNTPGRKTVSVLILALLIVGFVLTAGCVGLVNPTPNEVMIRGNLISVDPTYVDGTFIWKL CCCCCHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCEEEEEEEEEECCCEECCEEEEEE LLDPNGYEPEMVAAVDGYLIPQNPLIELGAGIGSLSAYMNDKLTMSVNQVSVEPNPYLIP EECCCCCCCCEEEEECCEECCCCCHHEECCCCHHHHHHHCCEEEEEEEEEEECCCCEEEC SLNLTKQNNDLGVTFVQKTIGYGSNTVAISVTSDITNNRIVRPDGVLVKSVEVDTTTVQK CCEEEECCCCCEEEEEEHHHCCCCCEEEEEEECCCCCCEEECCCCEEEEEEECCHHHHHH LAQNAGFTSNITLVMNIVGYEHAVVQYEAEFLSQNVSTVIAAVYTDGKNTPDSFAEKMEL HHHHCCCCCCEEEEEEECCCCEEEEEEEHHHHHCCHHHEEEEEEECCCCCHHHHHHHHHH IGFTEQSRGMAAEKGYVVMVFTK HCCCCHHCCCCCCCCEEEEEEEC >Mature Secondary Structure MNTPGRKTVSVLILALLIVGFVLTAGCVGLVNPTPNEVMIRGNLISVDPTYVDGTFIWKL CCCCCHHHHHHHHHHHHHHHHHHHHCCEEECCCCCCCEEEEEEEEEECCCEECCEEEEEE LLDPNGYEPEMVAAVDGYLIPQNPLIELGAGIGSLSAYMNDKLTMSVNQVSVEPNPYLIP EECCCCCCCCEEEEECCEECCCCCHHEECCCCHHHHHHHCCEEEEEEEEEEECCCCEEEC SLNLTKQNNDLGVTFVQKTIGYGSNTVAISVTSDITNNRIVRPDGVLVKSVEVDTTTVQK CCEEEECCCCCEEEEEEHHHCCCCCEEEEEEECCCCCCEEECCCCEEEEEEECCHHHHHH LAQNAGFTSNITLVMNIVGYEHAVVQYEAEFLSQNVSTVIAAVYTDGKNTPDSFAEKMEL HHHHCCCCCCEEEEEEECCCCEEEEEEEHHHHHCCHHHEEEEEEECCCCCHHHHHHHHHH IGFTEQSRGMAAEKGYVVMVFTK HCCCCHHCCCCCCCCEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA