Definition Methanocorpusculum labreanum Z chromosome, complete genome.
Accession NC_008942
Length 1,804,962

Click here to switch to the map view.

The map label for this gene is 124485974

Identifier: 124485974

GI number: 124485974

Start: 1169431

End: 1170090

Strand: Reverse

Name: 124485974

Synonym: Mlab_1154

Alternate gene names: NA

Gene position: 1170090-1169431 (Counterclockwise)

Preceding gene: 124485975

Following gene: 124485973

Centisome position: 64.83

GC content: 56.36

Gene sequence:

>660_bases
ATGCAGATACGATACGCCGGCCACTCCTGTTTCATCATCGAAGGCTCGAAGAAACTTTTATTCGATCCCATGCCGCTCGA
AGATCCCGCGGCAGTTGAGGCCGATCTCACCCTGATATCCCACGCGCACGCCGATCATATCGGTGATGCTTTTGCTCGTT
TCTCCCTCACGATCGCGGTCCACGAACTGTCCGGCTATCTGAAATCGCTCGGCGTCAAAACGATCGGGATGAACATCGGC
GGCTCGGTCGAATGGGAGGGGATCACGGTTCGAATGGTCCCGGCAACGCATTCGTCCTCGATCCGCCAGAAAGACGGCAC
AAGTCTCTATATGGGGCAGGCCTGCGGATTCGTCGTCGAGATGGACGGGCATGTAATATATTACGCTGGCGACACCGGGC
TTTTCTCCGATATGAAACTCATTCGCGAACTCTACCACCCGGACATCGCGATCCTTCCTGCCGGCGGCCGCTATACGATG
GGACCCGAAGAGTGTATGATGGCCGCGGCATGGATTGGGGCGAAGACGGTCATTCCGATGCATGTGAATACGTATCCGGA
GATCGAGCAGGATATGCCGGCGTTTAAGCGGGCCATCGAGCTGACGACCGTGATGCATGTCGAAATTATGCAGCCGGACG
ATGTGCTCGAACTGCCGTAA

Upstream 100 bases:

>100_bases
GAAGATACGCTCGGCGAGTCCATCGACGTTGCCGAGTCGACGGATATGACCGAACTCAACTAACCCTATTTTTTTATTTG
CCGAAGACGATTATCTACGC

Downstream 100 bases:

>100_bases
AAATCCAGGTCCGGGTATAAAACCTATCATTTTATTTAAATAGAAAAACCAATCACTACATATTTATGACAAATGTGAAG
ATTGGTAACACCAGATCCGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 219; Mature: 219

Protein sequence:

>219_residues
MQIRYAGHSCFIIEGSKKLLFDPMPLEDPAAVEADLTLISHAHADHIGDAFARFSLTIAVHELSGYLKSLGVKTIGMNIG
GSVEWEGITVRMVPATHSSSIRQKDGTSLYMGQACGFVVEMDGHVIYYAGDTGLFSDMKLIRELYHPDIAILPAGGRYTM
GPEECMMAAAWIGAKTVIPMHVNTYPEIEQDMPAFKRAIELTTVMHVEIMQPDDVLELP

Sequences:

>Translated_219_residues
MQIRYAGHSCFIIEGSKKLLFDPMPLEDPAAVEADLTLISHAHADHIGDAFARFSLTIAVHELSGYLKSLGVKTIGMNIG
GSVEWEGITVRMVPATHSSSIRQKDGTSLYMGQACGFVVEMDGHVIYYAGDTGLFSDMKLIRELYHPDIAILPAGGRYTM
GPEECMMAAAWIGAKTVIPMHVNTYPEIEQDMPAFKRAIELTTVMHVEIMQPDDVLELP
>Mature_219_residues
MQIRYAGHSCFIIEGSKKLLFDPMPLEDPAAVEADLTLISHAHADHIGDAFARFSLTIAVHELSGYLKSLGVKTIGMNIG
GSVEWEGITVRMVPATHSSSIRQKDGTSLYMGQACGFVVEMDGHVIYYAGDTGLFSDMKLIRELYHPDIAILPAGGRYTM
GPEECMMAAAWIGAKTVIPMHVNTYPEIEQDMPAFKRAIELTTVMHVEIMQPDDVLELP

Specific function: Unknown

COG id: COG2220

COG function: function code R; Predicted Zn-dependent hydrolases of the beta-lactamase fold

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0173 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1154_METLZ (A2SSL7)

Other databases:

- EMBL:   CP000559
- RefSeq:   YP_001030590.1
- ProteinModelPortal:   A2SSL7
- STRING:   A2SSL7
- GeneID:   4796133
- GenomeReviews:   CP000559_GR
- KEGG:   mla:Mlab_1154
- eggNOG:   arNOG08649
- HOGENOM:   HBG741314
- OMA:   FPIIDQT
- BioCyc:   MLAB410358:MLAB_1154-MONOMER
- HAMAP:   MF_00457
- InterPro:   IPR001279
- InterPro:   IPR022877
- SMART:   SM00849

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24055; Mature: 24055

Theoretical pI: Translated: 4.91; Mature: 4.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
6.4 %Met     (Translated Protein)
7.8 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
6.4 %Met     (Mature Protein)
7.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQIRYAGHSCFIIEGSKKLLFDPMPLEDPAAVEADLTLISHAHADHIGDAFARFSLTIAV
CEEEECCCEEEEEECCCEEEECCCCCCCCCCCEEEEHEEHHHCHHHHHHHHHHEEEEEEE
HELSGYLKSLGVKTIGMNIGGSVEWEGITVRMVPATHSSSIRQKDGTSLYMGQACGFVVE
EHHHHHHHHCCEEEEEECCCCEEEECCEEEEEEECCCCCCCCCCCCCEEEEECCCCEEEE
MDGHVIYYAGDTGLFSDMKLIRELYHPDIAILPAGGRYTMGPEECMMAAAWIGAKTVIPM
ECCEEEEEECCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEE
HVNTYPEIEQDMPAFKRAIELTTVMHVEIMQPDDVLELP
EECCCCCHHHHHHHHHHHHHEEEEEEEEEECCCCCCCCC
>Mature Secondary Structure
MQIRYAGHSCFIIEGSKKLLFDPMPLEDPAAVEADLTLISHAHADHIGDAFARFSLTIAV
CEEEECCCEEEEEECCCEEEECCCCCCCCCCCEEEEHEEHHHCHHHHHHHHHHEEEEEEE
HELSGYLKSLGVKTIGMNIGGSVEWEGITVRMVPATHSSSIRQKDGTSLYMGQACGFVVE
EHHHHHHHHCCEEEEEECCCCEEEECCEEEEEEECCCCCCCCCCCCCEEEEECCCCEEEE
MDGHVIYYAGDTGLFSDMKLIRELYHPDIAILPAGGRYTMGPEECMMAAAWIGAKTVIPM
ECCEEEEEECCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEE
HVNTYPEIEQDMPAFKRAIELTTVMHVEIMQPDDVLELP
EECCCCCHHHHHHHHHHHHHEEEEEEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA