| Definition | Methanocorpusculum labreanum Z chromosome, complete genome. |
|---|---|
| Accession | NC_008942 |
| Length | 1,804,962 |
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The map label for this gene is 124485840
Identifier: 124485840
GI number: 124485840
Start: 1028865
End: 1029842
Strand: Reverse
Name: 124485840
Synonym: Mlab_1020
Alternate gene names: NA
Gene position: 1029842-1028865 (Counterclockwise)
Preceding gene: 124485842
Following gene: 124485837
Centisome position: 57.06
GC content: 47.96
Gene sequence:
>978_bases ATGCCGGAAAAAGATCTAGCTGAGACGCTTGCCAGTATGGCAGACCCGAAAAATTTCCCCAAGGATCTGGCAGTGATTCT GGTTTGGGTCGCGCTTACGGTAGCTATGATCTATGTTCCGGTCGTAAACGAGACGTTTCTTCGGGTATTATTTGCCGTTC CGGTGATTCTTTTTATTCCGGGGTATGTTTTGATCGGCGCACTGTTTCCGGAAAAGAAGTCGATCGACGGGATCGAACGG TTTGCTCTCTCAGTCGGTCTTTCGATTGCGGTAGTGCCGCTGATCGGCCTCGTTCTGAATTATACGCCGTTTGGGATTCG TCTTGATCCGATCGTTACCTCTCTGGTGATCTTTATTCTTGCGATGATGATCATCACGGTATACAGGCGTGCGTCCGTTC CAGATGAGGAACGGTTTGCCGTGCCTTTCGAGCAGGTAAAACCGACACTCAAAACCGAATTTTTCCCAAAGGACAGTTCA AAACTGGACAAGGCACTCTCCTGGATCCTTATCGCGGCAATTGTCGTGGCGGCCGTGACAACGGTCTATGTGATCGCATT TCCAAAAGACGGGGAGAAGTTTACCGAGTTTTATATTTTAGGGGCGGATAAAATGGCAGATGACTACCCCGAGAAGTTTT TTGCGGGAACAGAACAGTTTGTCTGGATCGGGATCGGGAATCATGAATATCGGGATGTGACCTATACGGTTGAAACCCTA CTATTGAATGCGGAGTGGGATTCAACAACGAACTCGTCGGTCATTCATGCATCGAAGGTCCTTAATCGCTTTTCGGTAGA TGTTGCCGATAACTCGACGTATCTGGAGATGTATAATTTTACGATCTACGATACCGAGTACAACCGTCTGGAGTTCCTTT TGTATAATGAGACGGTACCTGATATCGGGGCGTCGGCAGAGGATAAAATGGCGGCCGCGTACCGTGATCTCCATCTCTGG ATCAAAGTAATAACATAA
Upstream 100 bases:
>100_bases ATACCTGACGACGTGATCAAAAACAAGTCTGCCGGTAATCTCACCCCCTAAAGCGTCCCGCAAGTCTCATAATACCTCAC CACGAATAATACATCCAGAT
Downstream 100 bases:
>100_bases ACACAGGATTTTTTTGCGGGTCGATAAGCAAGAGGCCCGCAGTAATTTTTGCCGGGTATATCTCGGATTAAAATGTGATG TGAAAATTTCTCAGTCGCTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 325; Mature: 324
Protein sequence:
>325_residues MPEKDLAETLASMADPKNFPKDLAVILVWVALTVAMIYVPVVNETFLRVLFAVPVILFIPGYVLIGALFPEKKSIDGIER FALSVGLSIAVVPLIGLVLNYTPFGIRLDPIVTSLVIFILAMMIITVYRRASVPDEERFAVPFEQVKPTLKTEFFPKDSS KLDKALSWILIAAIVVAAVTTVYVIAFPKDGEKFTEFYILGADKMADDYPEKFFAGTEQFVWIGIGNHEYRDVTYTVETL LLNAEWDSTTNSSVIHASKVLNRFSVDVADNSTYLEMYNFTIYDTEYNRLEFLLYNETVPDIGASAEDKMAAAYRDLHLW IKVIT
Sequences:
>Translated_325_residues MPEKDLAETLASMADPKNFPKDLAVILVWVALTVAMIYVPVVNETFLRVLFAVPVILFIPGYVLIGALFPEKKSIDGIER FALSVGLSIAVVPLIGLVLNYTPFGIRLDPIVTSLVIFILAMMIITVYRRASVPDEERFAVPFEQVKPTLKTEFFPKDSS KLDKALSWILIAAIVVAAVTTVYVIAFPKDGEKFTEFYILGADKMADDYPEKFFAGTEQFVWIGIGNHEYRDVTYTVETL LLNAEWDSTTNSSVIHASKVLNRFSVDVADNSTYLEMYNFTIYDTEYNRLEFLLYNETVPDIGASAEDKMAAAYRDLHLW IKVIT >Mature_324_residues PEKDLAETLASMADPKNFPKDLAVILVWVALTVAMIYVPVVNETFLRVLFAVPVILFIPGYVLIGALFPEKKSIDGIERF ALSVGLSIAVVPLIGLVLNYTPFGIRLDPIVTSLVIFILAMMIITVYRRASVPDEERFAVPFEQVKPTLKTEFFPKDSSK LDKALSWILIAAIVVAAVTTVYVIAFPKDGEKFTEFYILGADKMADDYPEKFFAGTEQFVWIGIGNHEYRDVTYTVETLL LNAEWDSTTNSSVIHASKVLNRFSVDVADNSTYLEMYNFTIYDTEYNRLEFLLYNETVPDIGASAEDKMAAAYRDLHLWI KVIT
Specific function: Unknown
COG id: COG4743
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 36559; Mature: 36428
Theoretical pI: Translated: 4.45; Mature: 4.45
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPEKDLAETLASMADPKNFPKDLAVILVWVALTVAMIYVPVVNETFLRVLFAVPVILFIP CCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GYVLIGALFPEKKSIDGIERFALSVGLSIAVVPLIGLVLNYTPFGIRLDPIVTSLVIFIL HHHHHHHHCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHH AMMIITVYRRASVPDEERFAVPFEQVKPTLKTEFFPKDSSKLDKALSWILIAAIVVAAVT HHHHHHHHHHCCCCCCCCCCCCHHHHCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH TVYVIAFPKDGEKFTEFYILGADKMADDYPEKFFAGTEQFVWIGIGNHEYRDVTYTVETL HHEEEEECCCCCCEEEEEEECCHHHHHHCHHHHHCCCCEEEEEEECCCCCCHHEEEEEHE LLNAEWDSTTNSSVIHASKVLNRFSVDVADNSTYLEMYNFTIYDTEYNRLEFLLYNETVP EEECCCCCCCCCCHHHHHHHHHHHEEEECCCCEEEEEEEEEEEECCCCEEEEEEECCCCC DIGASAEDKMAAAYRDLHLWIKVIT CCCCCCHHHHHHHHHHHHHEEEEEC >Mature Secondary Structure PEKDLAETLASMADPKNFPKDLAVILVWVALTVAMIYVPVVNETFLRVLFAVPVILFIP CCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GYVLIGALFPEKKSIDGIERFALSVGLSIAVVPLIGLVLNYTPFGIRLDPIVTSLVIFIL HHHHHHHHCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHH AMMIITVYRRASVPDEERFAVPFEQVKPTLKTEFFPKDSSKLDKALSWILIAAIVVAAVT HHHHHHHHHHCCCCCCCCCCCCHHHHCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH TVYVIAFPKDGEKFTEFYILGADKMADDYPEKFFAGTEQFVWIGIGNHEYRDVTYTVETL HHEEEEECCCCCCEEEEEEECCHHHHHHCHHHHHCCCCEEEEEEECCCCCCHHEEEEEHE LLNAEWDSTTNSSVIHASKVLNRFSVDVADNSTYLEMYNFTIYDTEYNRLEFLLYNETVP EEECCCCCCCCCCHHHHHHHHHHHEEEECCCCEEEEEEEEEEEECCCCEEEEEEECCCCC DIGASAEDKMAAAYRDLHLWIKVIT CCCCCCHHHHHHHHHHHHHEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA