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The map label for this gene is 124485746

Identifier: 124485746

GI number: 124485746

Start: 919369

End: 920460

Strand: Reverse

Name: 124485746

Synonym: Mlab_0924

Alternate gene names: NA

Gene position: 920460-919369 (Counterclockwise)

Preceding gene: 124485747

Following gene: 124485745

Centisome position: 51.0

GC content: 55.86

Gene sequence:

>1092_bases
ATGAGCCTCACACAAGGATTCTGTCCCAAATGCGGTGCTCCGTCGGAAAACGGCGAACTCTGCGGCAAATGCCGGGTCAA
AGACACCGTCTGGGTAACCATCGCTCCCCGTGCAGAATGCATCATCTGCCCTACCTGCGAGTCCATAAAAACCGCTGGAA
TGTGGTCCGACAGTGCGGTCGACAAAGAGGAACTTGGTCAAAATCTCGTCAACAGCGTCATCGTGTTCCACAAAGACGTC
GAAGACATCCAAAAAGAGATCAGCATCATCGACACGAGCAGCAACCGGTCCCTTGCAACCGTCCATGTTTCAGGAAACCT
CTACGGCATCCCTCTCGAAGAGACCACAAAAGTCAAGATCGTCTGGGCCCGCGAACAGTGCGACCGGTGTTGCAGGATCG
CCGGAAGCTACTACGAAGGCGTCATCCAGGTCAGAGCCTCGGGAAGAAAACCGACCCAGTTCGAACTGCGCCGTGCAGCC
GAGATCGCCTATCAGGTCGAAGACCAGCTCCAGACTGCCGGCGACCGGCTCTCCTTCGTCTCGGATATCGACGAGACCAA
AGACGGGATCGACATCGTCTTCAGCTCGCAGACGATCGGAGCGGCCATCTCCCACGACATCTGCGGAGCGCTCGGCGGTT
CCTTTACCACCCACCCGAAACTCGTCGGCCAAAAAGCCGGCATCAACATCTACCGGGTGACCTACTCGCTTCGTCTGCCG
AGATTCTCCCGCGGGGACATCATCAAACACGGCAGAGAATACTTCCAGATCCTTCGCCAGGCAAAAGACACCCTCTTCGT
CCGTGATCTCGCGACCGGTCAGTCCCGTGCCTTCAGAGAGGATGAAAACGATCCGCTTCTTGGAAACATCCACGAACCCG
AGACGGGCGTCGTCATCTACAAGGACGCAGGGCTTTTAGGTTTTCTCAACCTCAAAACCGAAACGACCGAAGAGATCGCC
GAACGTTCCTGGCTCGATACAAGGGAAGGCGACACGATCCTGTTTGTCCGTGACGGAGAAACGCTTGTGTTAGTTGGAAG
AGATGAAGATCAGGAAGATTTCGAAGCGATCGCTCCCGAATGCAGCGAGTGA

Upstream 100 bases:

>100_bases
GCAAACGCGTCTGCGATATAGCGATCAAAGCAGGCCTTCTCGAAATAGAATCCTGTCTGCTGATCGAAGGCGTACCCCAC
GCCCAGATCTACGGAGTATA

Downstream 100 bases:

>100_bases
ACCCTGGGTTGATGCGACCCGCCGCGTCTACTGCGAAGGTGAGTATGCCTTCGTTCCGGTGAAGGAAGGCTATCCCTTCG
ACGGCGAGATCCCCGACCGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 363; Mature: 362

Protein sequence:

>363_residues
MSLTQGFCPKCGAPSENGELCGKCRVKDTVWVTIAPRAECIICPTCESIKTAGMWSDSAVDKEELGQNLVNSVIVFHKDV
EDIQKEISIIDTSSNRSLATVHVSGNLYGIPLEETTKVKIVWAREQCDRCCRIAGSYYEGVIQVRASGRKPTQFELRRAA
EIAYQVEDQLQTAGDRLSFVSDIDETKDGIDIVFSSQTIGAAISHDICGALGGSFTTHPKLVGQKAGINIYRVTYSLRLP
RFSRGDIIKHGREYFQILRQAKDTLFVRDLATGQSRAFREDENDPLLGNIHEPETGVVIYKDAGLLGFLNLKTETTEEIA
ERSWLDTREGDTILFVRDGETLVLVGRDEDQEDFEAIAPECSE

Sequences:

>Translated_363_residues
MSLTQGFCPKCGAPSENGELCGKCRVKDTVWVTIAPRAECIICPTCESIKTAGMWSDSAVDKEELGQNLVNSVIVFHKDV
EDIQKEISIIDTSSNRSLATVHVSGNLYGIPLEETTKVKIVWAREQCDRCCRIAGSYYEGVIQVRASGRKPTQFELRRAA
EIAYQVEDQLQTAGDRLSFVSDIDETKDGIDIVFSSQTIGAAISHDICGALGGSFTTHPKLVGQKAGINIYRVTYSLRLP
RFSRGDIIKHGREYFQILRQAKDTLFVRDLATGQSRAFREDENDPLLGNIHEPETGVVIYKDAGLLGFLNLKTETTEEIA
ERSWLDTREGDTILFVRDGETLVLVGRDEDQEDFEAIAPECSE
>Mature_362_residues
SLTQGFCPKCGAPSENGELCGKCRVKDTVWVTIAPRAECIICPTCESIKTAGMWSDSAVDKEELGQNLVNSVIVFHKDVE
DIQKEISIIDTSSNRSLATVHVSGNLYGIPLEETTKVKIVWAREQCDRCCRIAGSYYEGVIQVRASGRKPTQFELRRAAE
IAYQVEDQLQTAGDRLSFVSDIDETKDGIDIVFSSQTIGAAISHDICGALGGSFTTHPKLVGQKAGINIYRVTYSLRLPR
FSRGDIIKHGREYFQILRQAKDTLFVRDLATGQSRAFREDENDPLLGNIHEPETGVVIYKDAGLLGFLNLKTETTEEIAE
RSWLDTREGDTILFVRDGETLVLVGRDEDQEDFEAIAPECSE

Specific function: Unknown

COG id: COG1499

COG function: function code J; NMD protein affecting ribosome stability and mRNA decay

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007064 [H]

Pfam domain/function: PF04981 NMD3 [H]

EC number: NA

Molecular weight: Translated: 40280; Mature: 40149

Theoretical pI: Translated: 4.65; Mature: 4.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.3 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
3.3 %Cys     (Mature Protein)
0.3 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLTQGFCPKCGAPSENGELCGKCRVKDTVWVTIAPRAECIICPTCESIKTAGMWSDSAV
CCCCCCCCCCCCCCCCCCCCEEEEEECEEEEEEECCCCCEEECCCCHHHHHCCCCCCCCC
DKEELGQNLVNSVIVFHKDVEDIQKEISIIDTSSNRSLATVHVSGNLYGIPLEETTKVKI
CHHHHHHHHHHHHEEEECCHHHHHHHHEEEECCCCCEEEEEEECCCEEEECCCCCCEEEE
VWAREQCDRCCRIAGSYYEGVIQVRASGRKPTQFELRRAAEIAYQVEDQLQTAGDRLSFV
EEEHHHHHHHHHHHCHHHEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
SDIDETKDGIDIVFSSQTIGAAISHDICGALGGSFTTHPKLVGQKAGINIYRVTYSLRLP
HHHHCCCCCEEEEEECCHHCHHHHHHHHHHHCCCCCCCCHHCCCCCCCEEEEEEEEEECC
RFSRGDIIKHGREYFQILRQAKDTLFVRDLATGQSRAFREDENDPLLGNIHEPETGVVIY
CCCCCCHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
KDAGLLGFLNLKTETTEEIAERSWLDTREGDTILFVRDGETLVLVGRDEDQEDFEAIAPE
ECCCEEEEEECCCCCHHHHHHHHCCCCCCCCEEEEEECCCEEEEEECCCCHHHHHHCCCC
CSE
CCC
>Mature Secondary Structure 
SLTQGFCPKCGAPSENGELCGKCRVKDTVWVTIAPRAECIICPTCESIKTAGMWSDSAV
CCCCCCCCCCCCCCCCCCCEEEEEECEEEEEEECCCCCEEECCCCHHHHHCCCCCCCCC
DKEELGQNLVNSVIVFHKDVEDIQKEISIIDTSSNRSLATVHVSGNLYGIPLEETTKVKI
CHHHHHHHHHHHHEEEECCHHHHHHHHEEEECCCCCEEEEEEECCCEEEECCCCCCEEEE
VWAREQCDRCCRIAGSYYEGVIQVRASGRKPTQFELRRAAEIAYQVEDQLQTAGDRLSFV
EEEHHHHHHHHHHHCHHHEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
SDIDETKDGIDIVFSSQTIGAAISHDICGALGGSFTTHPKLVGQKAGINIYRVTYSLRLP
HHHHCCCCCEEEEEECCHHCHHHHHHHHHHHCCCCCCCCHHCCCCCCCEEEEEEEEEECC
RFSRGDIIKHGREYFQILRQAKDTLFVRDLATGQSRAFREDENDPLLGNIHEPETGVVIY
CCCCCCHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
KDAGLLGFLNLKTETTEEIAERSWLDTREGDTILFVRDGETLVLVGRDEDQEDFEAIAPE
ECCCEEEEEECCCCCHHHHHHHHCCCCCCCCEEEEEECCCEEEEEECCCCHHHHHHCCCC
CSE
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]