| Definition | Methanocorpusculum labreanum Z chromosome, complete genome. |
|---|---|
| Accession | NC_008942 |
| Length | 1,804,962 |
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The map label for this gene is 124485077
Identifier: 124485077
GI number: 124485077
Start: 234405
End: 235367
Strand: Reverse
Name: 124485077
Synonym: Mlab_0250
Alternate gene names: NA
Gene position: 235367-234405 (Counterclockwise)
Preceding gene: 124485078
Following gene: 124485076
Centisome position: 13.04
GC content: 48.08
Gene sequence:
>963_bases ATGAACAAAGTAGAGAAAATATTGTACACAGTGCTCCTCCTGATGGTCGTTGGATGTTGGCCGGCATTTGCCGCGGATAC CGCAGGTGAGGTTCTTCCCTCATACAAACAGGTGGATATCTCAACATCCGACGGAACAATATACACAGTCAGATTCGATG ATGAGGGTGGACTGAATTCATTGCATCTTACGACAATCCCGGAAGAACCTTACGGTCAGGTAACAACAACGAACCGCCAG ACGGGGACGATCTATGTTTCCTATACCGGCGGCAGAGGATTCAATGACAGAATCATTCTGATGATTGCCGTGAATGGGTC CATCTCCGATGATTTTGCTCTCCACCTTATCTCCAGCGGATATCAGTGGAGCCCAACACCAATCCTAAACATCGGGCCGG CATATGACGATCTGACTTATGCAGAGCAGGCGGCAGTGACAACCTTGACTGCGGAGTATTTCACATATGCCTCGCAGACA TGGAAGCCGGCAGGTATCGAAAATTATCCAATCTACTTCGGACAAAATACATCTGACGCATCGAATGGATTTTCCATCCT TTTTTTTGATACGAAAGCTGGCAATCTTGGAGTAAACAGCGGCCTTACCGGTCTTCGCGATCAGGGAGCGGTCAAGATCG AGTATGCATTCGAAAATCTCAGCGGTAGTGCTGTTTTCAATGCTTATGCATGGTGTAATCAGTCAAACGAGGGAGAGGGA ATTTCCTGGACAAACCGTGTCGTTGACGACGGAAAGGGCGGTTCAAGCGGCTATACTGTTTTAGGAAGCGGTCTCTCGCC GGATTCAGGAGAATTTATCACCACAGTTTCATCCGAGGAATATTCCCCAACGGAAGAGACAGAAAACCAACAGGATACTC CAAAAAATCCGATCGGGTTGTGCGGAATCGGAGCAGGTATCTGCGGTGCTGCAGTCATTTTCAGAAAAAACGGCAATCGG TGA
Upstream 100 bases:
>100_bases GACTAAGTCACCGATCAGCGCATTCCTTATCATTGCCGGCATTATGGGATCAGCATATCTGGTTGCGAGACGAAAGTAAA ATCTGGATTTTGGAGCCTGC
Downstream 100 bases:
>100_bases TTTAATCACCAAAGGTGATTTGAGTCTGGACGAACTTATTATGCCGTCACAAGACATATGATGTAAGGATTATGCGTATT ATCAATATTATCGGCCATTC
Product: nitroreductase
Products: NA
Alternate protein names: PKD Domain-Containing Protein; PKD Domain Containing Protein; PEGA Domain-Containing Protein
Number of amino acids: Translated: 320; Mature: 320
Protein sequence:
>320_residues MNKVEKILYTVLLLMVVGCWPAFAADTAGEVLPSYKQVDISTSDGTIYTVRFDDEGGLNSLHLTTIPEEPYGQVTTTNRQ TGTIYVSYTGGRGFNDRIILMIAVNGSISDDFALHLISSGYQWSPTPILNIGPAYDDLTYAEQAAVTTLTAEYFTYASQT WKPAGIENYPIYFGQNTSDASNGFSILFFDTKAGNLGVNSGLTGLRDQGAVKIEYAFENLSGSAVFNAYAWCNQSNEGEG ISWTNRVVDDGKGGSSGYTVLGSGLSPDSGEFITTVSSEEYSPTEETENQQDTPKNPIGLCGIGAGICGAAVIFRKNGNR
Sequences:
>Translated_320_residues MNKVEKILYTVLLLMVVGCWPAFAADTAGEVLPSYKQVDISTSDGTIYTVRFDDEGGLNSLHLTTIPEEPYGQVTTTNRQ TGTIYVSYTGGRGFNDRIILMIAVNGSISDDFALHLISSGYQWSPTPILNIGPAYDDLTYAEQAAVTTLTAEYFTYASQT WKPAGIENYPIYFGQNTSDASNGFSILFFDTKAGNLGVNSGLTGLRDQGAVKIEYAFENLSGSAVFNAYAWCNQSNEGEG ISWTNRVVDDGKGGSSGYTVLGSGLSPDSGEFITTVSSEEYSPTEETENQQDTPKNPIGLCGIGAGICGAAVIFRKNGNR >Mature_320_residues MNKVEKILYTVLLLMVVGCWPAFAADTAGEVLPSYKQVDISTSDGTIYTVRFDDEGGLNSLHLTTIPEEPYGQVTTTNRQ TGTIYVSYTGGRGFNDRIILMIAVNGSISDDFALHLISSGYQWSPTPILNIGPAYDDLTYAEQAAVTTLTAEYFTYASQT WKPAGIENYPIYFGQNTSDASNGFSILFFDTKAGNLGVNSGLTGLRDQGAVKIEYAFENLSGSAVFNAYAWCNQSNEGEG ISWTNRVVDDGKGGSSGYTVLGSGLSPDSGEFITTVSSEEYSPTEETENQQDTPKNPIGLCGIGAGICGAAVIFRKNGNR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34347; Mature: 34347
Theoretical pI: Translated: 4.09; Mature: 4.09
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNKVEKILYTVLLLMVVGCWPAFAADTAGEVLPSYKQVDISTSDGTIYTVRFDDEGGLNS CCHHHHHHHHHHHHHHHCCCCHHHCCCHHHHCCCCEEEEEECCCCEEEEEEECCCCCCCE LHLTTIPEEPYGQVTTTNRQTGTIYVSYTGGRGFNDRIILMIAVNGSISDDFALHLISSG EEEEECCCCCCCCEEECCCCCEEEEEEECCCCCCCCCEEEEEEECCCCCCCEEEEEECCC YQWSPTPILNIGPAYDDLTYAEQAAVTTLTAEYFTYASQTWKPAGIENYPIYFGQNTSDA CCCCCCCEEECCCCCCCCHHHHHHHHEEEEHHHHHHHCCCCCCCCCCCCCEEECCCCCCC SNGFSILFFDTKAGNLGVNSGLTGLRDQGAVKIEYAFENLSGSAVFNAYAWCNQSNEGEG CCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEEEEECCCCCCCC ISWTNRVVDDGKGGSSGYTVLGSGLSPDSGEFITTVSSEEYSPTEETENQQDTPKNPIGL CEEHHHEEECCCCCCCCEEEEECCCCCCCCCEEEEECCCCCCCCHHCCCCCCCCCCCCEE CGIGAGICGAAVIFRKNGNR EECCHHHHCEEEEEEECCCC >Mature Secondary Structure MNKVEKILYTVLLLMVVGCWPAFAADTAGEVLPSYKQVDISTSDGTIYTVRFDDEGGLNS CCHHHHHHHHHHHHHHHCCCCHHHCCCHHHHCCCCEEEEEECCCCEEEEEEECCCCCCCE LHLTTIPEEPYGQVTTTNRQTGTIYVSYTGGRGFNDRIILMIAVNGSISDDFALHLISSG EEEEECCCCCCCCEEECCCCCEEEEEEECCCCCCCCCEEEEEEECCCCCCCEEEEEECCC YQWSPTPILNIGPAYDDLTYAEQAAVTTLTAEYFTYASQTWKPAGIENYPIYFGQNTSDA CCCCCCCEEECCCCCCCCHHHHHHHHEEEEHHHHHHHCCCCCCCCCCCCCEEECCCCCCC SNGFSILFFDTKAGNLGVNSGLTGLRDQGAVKIEYAFENLSGSAVFNAYAWCNQSNEGEG CCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEEEEECCCCCCCC ISWTNRVVDDGKGGSSGYTVLGSGLSPDSGEFITTVSSEEYSPTEETENQQDTPKNPIGL CEEHHHEEECCCCCCCCEEEEECCCCCCCCCEEEEECCCCCCCCHHCCCCCCCCCCCCEE CGIGAGICGAAVIFRKNGNR EECCHHHHCEEEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA