Definition Methanocorpusculum labreanum Z chromosome, complete genome.
Accession NC_008942
Length 1,804,962

Click here to switch to the map view.

The map label for this gene is 124485077

Identifier: 124485077

GI number: 124485077

Start: 234405

End: 235367

Strand: Reverse

Name: 124485077

Synonym: Mlab_0250

Alternate gene names: NA

Gene position: 235367-234405 (Counterclockwise)

Preceding gene: 124485078

Following gene: 124485076

Centisome position: 13.04

GC content: 48.08

Gene sequence:

>963_bases
ATGAACAAAGTAGAGAAAATATTGTACACAGTGCTCCTCCTGATGGTCGTTGGATGTTGGCCGGCATTTGCCGCGGATAC
CGCAGGTGAGGTTCTTCCCTCATACAAACAGGTGGATATCTCAACATCCGACGGAACAATATACACAGTCAGATTCGATG
ATGAGGGTGGACTGAATTCATTGCATCTTACGACAATCCCGGAAGAACCTTACGGTCAGGTAACAACAACGAACCGCCAG
ACGGGGACGATCTATGTTTCCTATACCGGCGGCAGAGGATTCAATGACAGAATCATTCTGATGATTGCCGTGAATGGGTC
CATCTCCGATGATTTTGCTCTCCACCTTATCTCCAGCGGATATCAGTGGAGCCCAACACCAATCCTAAACATCGGGCCGG
CATATGACGATCTGACTTATGCAGAGCAGGCGGCAGTGACAACCTTGACTGCGGAGTATTTCACATATGCCTCGCAGACA
TGGAAGCCGGCAGGTATCGAAAATTATCCAATCTACTTCGGACAAAATACATCTGACGCATCGAATGGATTTTCCATCCT
TTTTTTTGATACGAAAGCTGGCAATCTTGGAGTAAACAGCGGCCTTACCGGTCTTCGCGATCAGGGAGCGGTCAAGATCG
AGTATGCATTCGAAAATCTCAGCGGTAGTGCTGTTTTCAATGCTTATGCATGGTGTAATCAGTCAAACGAGGGAGAGGGA
ATTTCCTGGACAAACCGTGTCGTTGACGACGGAAAGGGCGGTTCAAGCGGCTATACTGTTTTAGGAAGCGGTCTCTCGCC
GGATTCAGGAGAATTTATCACCACAGTTTCATCCGAGGAATATTCCCCAACGGAAGAGACAGAAAACCAACAGGATACTC
CAAAAAATCCGATCGGGTTGTGCGGAATCGGAGCAGGTATCTGCGGTGCTGCAGTCATTTTCAGAAAAAACGGCAATCGG
TGA

Upstream 100 bases:

>100_bases
GACTAAGTCACCGATCAGCGCATTCCTTATCATTGCCGGCATTATGGGATCAGCATATCTGGTTGCGAGACGAAAGTAAA
ATCTGGATTTTGGAGCCTGC

Downstream 100 bases:

>100_bases
TTTAATCACCAAAGGTGATTTGAGTCTGGACGAACTTATTATGCCGTCACAAGACATATGATGTAAGGATTATGCGTATT
ATCAATATTATCGGCCATTC

Product: nitroreductase

Products: NA

Alternate protein names: PKD Domain-Containing Protein; PKD Domain Containing Protein; PEGA Domain-Containing Protein

Number of amino acids: Translated: 320; Mature: 320

Protein sequence:

>320_residues
MNKVEKILYTVLLLMVVGCWPAFAADTAGEVLPSYKQVDISTSDGTIYTVRFDDEGGLNSLHLTTIPEEPYGQVTTTNRQ
TGTIYVSYTGGRGFNDRIILMIAVNGSISDDFALHLISSGYQWSPTPILNIGPAYDDLTYAEQAAVTTLTAEYFTYASQT
WKPAGIENYPIYFGQNTSDASNGFSILFFDTKAGNLGVNSGLTGLRDQGAVKIEYAFENLSGSAVFNAYAWCNQSNEGEG
ISWTNRVVDDGKGGSSGYTVLGSGLSPDSGEFITTVSSEEYSPTEETENQQDTPKNPIGLCGIGAGICGAAVIFRKNGNR

Sequences:

>Translated_320_residues
MNKVEKILYTVLLLMVVGCWPAFAADTAGEVLPSYKQVDISTSDGTIYTVRFDDEGGLNSLHLTTIPEEPYGQVTTTNRQ
TGTIYVSYTGGRGFNDRIILMIAVNGSISDDFALHLISSGYQWSPTPILNIGPAYDDLTYAEQAAVTTLTAEYFTYASQT
WKPAGIENYPIYFGQNTSDASNGFSILFFDTKAGNLGVNSGLTGLRDQGAVKIEYAFENLSGSAVFNAYAWCNQSNEGEG
ISWTNRVVDDGKGGSSGYTVLGSGLSPDSGEFITTVSSEEYSPTEETENQQDTPKNPIGLCGIGAGICGAAVIFRKNGNR
>Mature_320_residues
MNKVEKILYTVLLLMVVGCWPAFAADTAGEVLPSYKQVDISTSDGTIYTVRFDDEGGLNSLHLTTIPEEPYGQVTTTNRQ
TGTIYVSYTGGRGFNDRIILMIAVNGSISDDFALHLISSGYQWSPTPILNIGPAYDDLTYAEQAAVTTLTAEYFTYASQT
WKPAGIENYPIYFGQNTSDASNGFSILFFDTKAGNLGVNSGLTGLRDQGAVKIEYAFENLSGSAVFNAYAWCNQSNEGEG
ISWTNRVVDDGKGGSSGYTVLGSGLSPDSGEFITTVSSEEYSPTEETENQQDTPKNPIGLCGIGAGICGAAVIFRKNGNR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 34347; Mature: 34347

Theoretical pI: Translated: 4.09; Mature: 4.09

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKVEKILYTVLLLMVVGCWPAFAADTAGEVLPSYKQVDISTSDGTIYTVRFDDEGGLNS
CCHHHHHHHHHHHHHHHCCCCHHHCCCHHHHCCCCEEEEEECCCCEEEEEEECCCCCCCE
LHLTTIPEEPYGQVTTTNRQTGTIYVSYTGGRGFNDRIILMIAVNGSISDDFALHLISSG
EEEEECCCCCCCCEEECCCCCEEEEEEECCCCCCCCCEEEEEEECCCCCCCEEEEEECCC
YQWSPTPILNIGPAYDDLTYAEQAAVTTLTAEYFTYASQTWKPAGIENYPIYFGQNTSDA
CCCCCCCEEECCCCCCCCHHHHHHHHEEEEHHHHHHHCCCCCCCCCCCCCEEECCCCCCC
SNGFSILFFDTKAGNLGVNSGLTGLRDQGAVKIEYAFENLSGSAVFNAYAWCNQSNEGEG
CCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEEEEECCCCCCCC
ISWTNRVVDDGKGGSSGYTVLGSGLSPDSGEFITTVSSEEYSPTEETENQQDTPKNPIGL
CEEHHHEEECCCCCCCCEEEEECCCCCCCCCEEEEECCCCCCCCHHCCCCCCCCCCCCEE
CGIGAGICGAAVIFRKNGNR
EECCHHHHCEEEEEEECCCC
>Mature Secondary Structure
MNKVEKILYTVLLLMVVGCWPAFAADTAGEVLPSYKQVDISTSDGTIYTVRFDDEGGLNS
CCHHHHHHHHHHHHHHHCCCCHHHCCCHHHHCCCCEEEEEECCCCEEEEEEECCCCCCCE
LHLTTIPEEPYGQVTTTNRQTGTIYVSYTGGRGFNDRIILMIAVNGSISDDFALHLISSG
EEEEECCCCCCCCEEECCCCCEEEEEEECCCCCCCCCEEEEEEECCCCCCCEEEEEECCC
YQWSPTPILNIGPAYDDLTYAEQAAVTTLTAEYFTYASQTWKPAGIENYPIYFGQNTSDA
CCCCCCCEEECCCCCCCCHHHHHHHHEEEEHHHHHHHCCCCCCCCCCCCCEEECCCCCCC
SNGFSILFFDTKAGNLGVNSGLTGLRDQGAVKIEYAFENLSGSAVFNAYAWCNQSNEGEG
CCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEEEEECCCCCCCC
ISWTNRVVDDGKGGSSGYTVLGSGLSPDSGEFITTVSSEEYSPTEETENQQDTPKNPIGL
CEEHHHEEECCCCCCCCEEEEECCCCCCCCCEEEEECCCCCCCCHHCCCCCCCCCCCCEE
CGIGAGICGAAVIFRKNGNR
EECCHHHHCEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA