| Definition | Methanocorpusculum labreanum Z chromosome, complete genome. |
|---|---|
| Accession | NC_008942 |
| Length | 1,804,962 |
Click here to switch to the map view.
The map label for this gene is 124484948
Identifier: 124484948
GI number: 124484948
Start: 109977
End: 110579
Strand: Reverse
Name: 124484948
Synonym: Mlab_0120
Alternate gene names: NA
Gene position: 110579-109977 (Counterclockwise)
Preceding gene: 124484951
Following gene: 124484947
Centisome position: 6.13
GC content: 46.1
Gene sequence:
>603_bases ATGACGAAAAAGATCGTGGCCTTGTTCGGCAGCAACGTTATTGGAGGAAACACCGACAAACTTCTCAAAGAAGCGATTCG CGGAGCAGAAGATGCTGGGTGCATCGTCGAGAGATTGGATATCGTCAGCCTTGATCTCTCGGGATGCAGACAGATCTACC ACTGTATGGAAAAGGAACACTGCGTCATTTTAGATGAAGCGGAAAAATATCATACCCTGCTTAAAGAGGCAGACGGAATC ATCATTGCAACGCCTGTTATGACCTACGGGATACCCGGTCAGCTGAAATCCTTCATGGATAGATGCCAGCCGTTTTACAT GGCGAAATATTACCGGAAGCATTCGTTCATCTCCGATGAACATGCAAAGATCCGAAAAACCCTGTTCATCTGCATCTCAG GGATGAACACACCCGAGGTTTTCATCGGACCGGTCCTTACCGTAAAAGCATTCTGCCAGATCATCGACACGAAATATTTC GATGAACTGCTCCAAAATGATATGGACAACATTAAGAAAATAGAGAGCAAACCGGAAGTGATGAAAGCGGCATACGAAAA AGGGAGAGCATTGGGTGAAGCCATCACGAAAGCACGTGGATAA
Upstream 100 bases:
>100_bases TTCGAATGACATTTTTTATTCAGCGAAATATTGTCCGTCAAGCTAATTATTCTATGTATAGAAGCACATTTTTATAGATC GCCCGGCATAACATTCAACA
Downstream 100 bases:
>100_bases TTCTGAGATCAAATCGGAACTAATACGGCTTGCCGATCCGAAATACCGCACATTTTCGAGCGGTCTGATTCCGGGAGCTG ATAATATGATCGGGGTACGA
Product: hypothetical protein
Products: NA
Alternate protein names: Isf-2; MCJ-2; Mj2 [H]
Number of amino acids: Translated: 200; Mature: 199
Protein sequence:
>200_residues MTKKIVALFGSNVIGGNTDKLLKEAIRGAEDAGCIVERLDIVSLDLSGCRQIYHCMEKEHCVILDEAEKYHTLLKEADGI IIATPVMTYGIPGQLKSFMDRCQPFYMAKYYRKHSFISDEHAKIRKTLFICISGMNTPEVFIGPVLTVKAFCQIIDTKYF DELLQNDMDNIKKIESKPEVMKAAYEKGRALGEAITKARG
Sequences:
>Translated_200_residues MTKKIVALFGSNVIGGNTDKLLKEAIRGAEDAGCIVERLDIVSLDLSGCRQIYHCMEKEHCVILDEAEKYHTLLKEADGI IIATPVMTYGIPGQLKSFMDRCQPFYMAKYYRKHSFISDEHAKIRKTLFICISGMNTPEVFIGPVLTVKAFCQIIDTKYF DELLQNDMDNIKKIESKPEVMKAAYEKGRALGEAITKARG >Mature_199_residues TKKIVALFGSNVIGGNTDKLLKEAIRGAEDAGCIVERLDIVSLDLSGCRQIYHCMEKEHCVILDEAEKYHTLLKEADGII IATPVMTYGIPGQLKSFMDRCQPFYMAKYYRKHSFISDEHAKIRKTLFICISGMNTPEVFIGPVLTVKAFCQIIDTKYFD ELLQNDMDNIKKIESKPEVMKAAYEKGRALGEAITKARG
Specific function: Redox-active protein probably involved in electron transport [H]
COG id: COG0655
COG function: function code R; Multimeric flavodoxin WrbA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ssuE family. Isf subfamily [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005025 [H]
Pfam domain/function: PF03358 FMN_red [H]
EC number: NA
Molecular weight: Translated: 22521; Mature: 22389
Theoretical pI: Translated: 7.76; Mature: 7.76
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.5 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 7.5 %Cys+Met (Translated Protein) 3.5 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 7.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTKKIVALFGSNVIGGNTDKLLKEAIRGAEDAGCIVERLDIVSLDLSGCRQIYHCMEKEH CCCHHHHHHCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCC CVILDEAEKYHTLLKEADGIIIATPVMTYGIPGQLKSFMDRCQPFYMAKYYRKHSFISDE EEEEECHHHHHHHHHHCCCEEEECHHHHHCCCHHHHHHHHHHCHHHHHHHHHHHCCCCHH HAKIRKTLFICISGMNTPEVFIGPVLTVKAFCQIIDTKYFDELLQNDMDNIKKIESKPEV HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH MKAAYEKGRALGEAITKARG HHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure TKKIVALFGSNVIGGNTDKLLKEAIRGAEDAGCIVERLDIVSLDLSGCRQIYHCMEKEH CCHHHHHHCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHCCCC CVILDEAEKYHTLLKEADGIIIATPVMTYGIPGQLKSFMDRCQPFYMAKYYRKHSFISDE EEEEECHHHHHHHHHHCCCEEEECHHHHHCCCHHHHHHHHHHCHHHHHHHHHHHCCCCHH HAKIRKTLFICISGMNTPEVFIGPVLTVKAFCQIIDTKYFDELLQNDMDNIKKIESKPEV HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH MKAAYEKGRALGEAITKARG HHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]