Definition Methylibium petroleiphilum PM1 chromosome, complete genome.
Accession NC_008825
Length 4,044,195

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The map label for this gene is 124266135

Identifier: 124266135

GI number: 124266135

Start: 995339

End: 996925

Strand: Reverse

Name: 124266135

Synonym: Mpe_A0942

Alternate gene names: NA

Gene position: 996925-995339 (Counterclockwise)

Preceding gene: 124266136

Following gene: 124266134

Centisome position: 24.65

GC content: 64.78

Gene sequence:

>1587_bases
ATGAAACGAAACAAGCGCTTCAAGCAGATCCCCGGGATCGCCCTCGCGGCGGCCCTGGGGGGCATGGCCACCTCGACGGT
GCACGCCGCCACCGAGGAGGCCAAGAGCAACGCCGGTGACGGCGACTACGCCTTCGCACTGTCCGGCTACGCCCGTGGCT
GGGTGTCGATGAACCTGCAGAACCAGCCCGAGCTGGAGCAGCAGGGCAAGAAGAGCCGGGGCAAGCTGTCGATGGTGCGC
GGCTCCGTGCTGCTCGACGCCGACGCGAAGACCGGCCCGATCAAGTGGAAGGCGATCACCCGTCTGGACCGCGAGTACAA
GACCAACTACCTCGAGGACCTCGAGGACCTGCGCGCCACCAACGGCACCACCGGTGGCGAAAGCATCATCAAGAACTACA
ACAACTTCGACGTGCGCGAGTTCTGGGCCGAGACCAACCTCGGCGACCGCACCACGGTGAAGTTCGGCAAGCAGCAGTTG
GTGTGGGGCGAGTCCGACTTCTTCCACGCGATGGACCTGGTGCACGGTTACGACCTGAGCTGGCGCCTGTTCTTCGAGGG
CGAGAACGAGGAGTGGCGCAAACCGCTGATCCTGCTGTCGACCAAGATCCGCATCCCCGAGGCCGACGGCATGCTGGCGG
CCTACATCCGCCCGGGCTGGGACCGCTGCCAGGACATCGGCAACACCTACGACATCGGCGGCGGTCGCTGGTTCTTCCAG
CCCTACCGCGGCTTCGACCTGCACGAGGTGACCAACAAGAACTGCAGCCACCCGTCGGGCGACTTCCGCGACGCCACCGG
CGGCGTGCGGTGGGCCGGCGAGGCCTTCGGCATGAACTATTCGTTCGCCTACCTGAAGACCTTCTCGGCCGATCCGGTGG
CCAACTCGGGCTCGCCCGGGAAGAGCTACGAGGGCGTCGCCGCCACCGGCGGCGTGTTCGACCTGATCCACCCGAAGATC
GACGTGTTCGGGGCCACGGTGAGCGGCTACAGCGACACGCTCGACGCCGTGCTGAGCGCCGAGGTCGCCTACACGAAGGA
CCAACCGTTCAACGTGGGCAGCGGCGCCTTCAATCCCGGCAACTACGCGTCGGGCATCGGCAATCCGGGCATCGGCCTGA
ACGGCGTGAAGCTCAAGGACACGCTGACCACGATGCTGCGCATCGACAAGAACCTGAAGTTCGAGGGGCTGCTGGGCACG
AGCCGGCCGTCGTTCTCGTCGATCCAGCTGTTCAACACGCAGATCCTCAACTACGAGGACAGCGATGACCTGGTCCGGCT
GTTCGCCTACGGCTCCAAGATCAAGGAGCACAGCACCATCCTGACCGCCTTCACGGTCCTCAACTACAAGAACGACGAGA
TCAACCCGGGCTTCGCCATCGGCTTCGATCTGAGCAACGGCGGTGGCTTCGCGATCCCGAGCGTGGCGATGACCTTGTCC
GACAAGTGGGTGGCCAAGCTCGAGGCCGACCTCTTCTGGGACGGCGGCAAGAGCAACAAGACGCAGTTCAGCGGCGAAGG
CTCGCAGCTGTTCGGCTACTTCAGCAAGGCCAGTCAGCTGGTGTTCCGCCTGACCCGGCAGTTTTGA

Upstream 100 bases:

>100_bases
GAGGGTGCCAGCCACTCGCGACGGCGCCGCTCCGGCGACGCCGTGCGGATCCGTGCTGGCTAATTTCTGGTTCTAGTGAA
AAGACGAAAGGAACGGAGAC

Downstream 100 bases:

>100_bases
TCACAGACAGGAGACATGAAGATGAAAACCGGAAAGAACATGACCAACCGACGCAGCGTGCTGCGCACCGGCTTCGGTGG
TGCCGTGGCCCTGGCCGCCG

Product: putative regulatory protein, LysR

Products: NA

Alternate protein names: Regulatory Protein LysR

Number of amino acids: Translated: 528; Mature: 528

Protein sequence:

>528_residues
MKRNKRFKQIPGIALAAALGGMATSTVHAATEEAKSNAGDGDYAFALSGYARGWVSMNLQNQPELEQQGKKSRGKLSMVR
GSVLLDADAKTGPIKWKAITRLDREYKTNYLEDLEDLRATNGTTGGESIIKNYNNFDVREFWAETNLGDRTTVKFGKQQL
VWGESDFFHAMDLVHGYDLSWRLFFEGENEEWRKPLILLSTKIRIPEADGMLAAYIRPGWDRCQDIGNTYDIGGGRWFFQ
PYRGFDLHEVTNKNCSHPSGDFRDATGGVRWAGEAFGMNYSFAYLKTFSADPVANSGSPGKSYEGVAATGGVFDLIHPKI
DVFGATVSGYSDTLDAVLSAEVAYTKDQPFNVGSGAFNPGNYASGIGNPGIGLNGVKLKDTLTTMLRIDKNLKFEGLLGT
SRPSFSSIQLFNTQILNYEDSDDLVRLFAYGSKIKEHSTILTAFTVLNYKNDEINPGFAIGFDLSNGGGFAIPSVAMTLS
DKWVAKLEADLFWDGGKSNKTQFSGEGSQLFGYFSKASQLVFRLTRQF

Sequences:

>Translated_528_residues
MKRNKRFKQIPGIALAAALGGMATSTVHAATEEAKSNAGDGDYAFALSGYARGWVSMNLQNQPELEQQGKKSRGKLSMVR
GSVLLDADAKTGPIKWKAITRLDREYKTNYLEDLEDLRATNGTTGGESIIKNYNNFDVREFWAETNLGDRTTVKFGKQQL
VWGESDFFHAMDLVHGYDLSWRLFFEGENEEWRKPLILLSTKIRIPEADGMLAAYIRPGWDRCQDIGNTYDIGGGRWFFQ
PYRGFDLHEVTNKNCSHPSGDFRDATGGVRWAGEAFGMNYSFAYLKTFSADPVANSGSPGKSYEGVAATGGVFDLIHPKI
DVFGATVSGYSDTLDAVLSAEVAYTKDQPFNVGSGAFNPGNYASGIGNPGIGLNGVKLKDTLTTMLRIDKNLKFEGLLGT
SRPSFSSIQLFNTQILNYEDSDDLVRLFAYGSKIKEHSTILTAFTVLNYKNDEINPGFAIGFDLSNGGGFAIPSVAMTLS
DKWVAKLEADLFWDGGKSNKTQFSGEGSQLFGYFSKASQLVFRLTRQF
>Mature_528_residues
MKRNKRFKQIPGIALAAALGGMATSTVHAATEEAKSNAGDGDYAFALSGYARGWVSMNLQNQPELEQQGKKSRGKLSMVR
GSVLLDADAKTGPIKWKAITRLDREYKTNYLEDLEDLRATNGTTGGESIIKNYNNFDVREFWAETNLGDRTTVKFGKQQL
VWGESDFFHAMDLVHGYDLSWRLFFEGENEEWRKPLILLSTKIRIPEADGMLAAYIRPGWDRCQDIGNTYDIGGGRWFFQ
PYRGFDLHEVTNKNCSHPSGDFRDATGGVRWAGEAFGMNYSFAYLKTFSADPVANSGSPGKSYEGVAATGGVFDLIHPKI
DVFGATVSGYSDTLDAVLSAEVAYTKDQPFNVGSGAFNPGNYASGIGNPGIGLNGVKLKDTLTTMLRIDKNLKFEGLLGT
SRPSFSSIQLFNTQILNYEDSDDLVRLFAYGSKIKEHSTILTAFTVLNYKNDEINPGFAIGFDLSNGGGFAIPSVAMTLS
DKWVAKLEADLFWDGGKSNKTQFSGEGSQLFGYFSKASQLVFRLTRQF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 58159; Mature: 58159

Theoretical pI: Translated: 6.42; Mature: 6.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRNKRFKQIPGIALAAALGGMATSTVHAATEEAKSNAGDGDYAFALSGYARGWVSMNLQ
CCCCCCHHHCCCHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCEEEECCC
NQPELEQQGKKSRGKLSMVRGSVLLDADAKTGPIKWKAITRLDREYKTNYLEDLEDLRAT
CCCCHHHHCCCCCCCEEEEECEEEEECCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHC
NGTTGGESIIKNYNNFDVREFWAETNLGDRTTVKFGKQQLVWGESDFFHAMDLVHGYDLS
CCCCCCHHHHHCCCCCCHHHHHHHCCCCCCEEEEECCEEEEECCCHHHHHHHHHHCCCCE
WRLFFEGENEEWRKPLILLSTKIRIPEADGMLAAYIRPGWDRCQDIGNTYDIGGGRWFFQ
EEEEEECCCHHHHCCEEEEEEEEECCCCCCEEEEEECCCHHHHHHCCCEEECCCCEEEEC
PYRGFDLHEVTNKNCSHPSGDFRDATGGVRWAGEAFGMNYSFAYLKTFSADPVANSGSPG
CCCCCCHHHHCCCCCCCCCCCCCCCCCCEEECHHHHCCCEEEEEEEECCCCCCCCCCCCC
KSYEGVAATGGVFDLIHPKIDVFGATVSGYSDTLDAVLSAEVAYTKDQPFNVGSGAFNPG
CCCCCEEECCCCHHHHCCCEEEEEEEECCCHHHHHHHHHHHEEECCCCCCCCCCCCCCCC
NYASGIGNPGIGLNGVKLKDTLTTMLRIDKNLKFEGLLGTSRPSFSSIQLFNTQILNYED
CCCCCCCCCCCCCCCEEHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEEEECCCC
SDDLVRLFAYGSKIKEHSTILTAFTVLNYKNDEINPGFAIGFDLSNGGGFAIPSVAMTLS
CHHHHHHHHHCCHHHHHHHEEEEEEEEECCCCCCCCCEEEEEEECCCCCEECCCEEEECC
DKWVAKLEADLFWDGGKSNKTQFSGEGSQLFGYFSKASQLVFRLTRQF
CHHHEEEEEEEEECCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKRNKRFKQIPGIALAAALGGMATSTVHAATEEAKSNAGDGDYAFALSGYARGWVSMNLQ
CCCCCCHHHCCCHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCEEEECCC
NQPELEQQGKKSRGKLSMVRGSVLLDADAKTGPIKWKAITRLDREYKTNYLEDLEDLRAT
CCCCHHHHCCCCCCCEEEEECEEEEECCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHC
NGTTGGESIIKNYNNFDVREFWAETNLGDRTTVKFGKQQLVWGESDFFHAMDLVHGYDLS
CCCCCCHHHHHCCCCCCHHHHHHHCCCCCCEEEEECCEEEEECCCHHHHHHHHHHCCCCE
WRLFFEGENEEWRKPLILLSTKIRIPEADGMLAAYIRPGWDRCQDIGNTYDIGGGRWFFQ
EEEEEECCCHHHHCCEEEEEEEEECCCCCCEEEEEECCCHHHHHHCCCEEECCCCEEEEC
PYRGFDLHEVTNKNCSHPSGDFRDATGGVRWAGEAFGMNYSFAYLKTFSADPVANSGSPG
CCCCCCHHHHCCCCCCCCCCCCCCCCCCEEECHHHHCCCEEEEEEEECCCCCCCCCCCCC
KSYEGVAATGGVFDLIHPKIDVFGATVSGYSDTLDAVLSAEVAYTKDQPFNVGSGAFNPG
CCCCCEEECCCCHHHHCCCEEEEEEEECCCHHHHHHHHHHHEEECCCCCCCCCCCCCCCC
NYASGIGNPGIGLNGVKLKDTLTTMLRIDKNLKFEGLLGTSRPSFSSIQLFNTQILNYED
CCCCCCCCCCCCCCCEEHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEEEECCCC
SDDLVRLFAYGSKIKEHSTILTAFTVLNYKNDEINPGFAIGFDLSNGGGFAIPSVAMTLS
CHHHHHHHHHCCHHHHHHHEEEEEEEEECCCCCCCCCEEEEEEECCCCCEECCCEEEECC
DKWVAKLEADLFWDGGKSNKTQFSGEGSQLFGYFSKASQLVFRLTRQF
CHHHEEEEEEEEECCCCCCCCEECCCCHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA