| Definition | Methylibium petroleiphilum PM1 chromosome, complete genome. |
|---|---|
| Accession | NC_008825 |
| Length | 4,044,195 |
Click here to switch to the map view.
The map label for this gene is mcp [C]
Identifier: 124266128
GI number: 124266128
Start: 989227
End: 990450
Strand: Direct
Name: mcp [C]
Synonym: Mpe_A0935
Alternate gene names: 124266128
Gene position: 989227-990450 (Clockwise)
Preceding gene: 124266127
Following gene: 124266129
Centisome position: 24.46
GC content: 69.28
Gene sequence:
>1224_bases ATGGCGATGAGGGTGTCCTTCTTCCGCGCGCGCCGGGACGCACCGCAGGAACCTGACGAGAAGGGCGCCGAGGTGGCACG GTTGCACTGGCAGGTCGCGGCATTGCAGGCCGAGATCCAAGGCCTGCAGATGCGCTTCGACCTGATCCGCCGTGCGTCGG GAGAAGGTCTGTGGGACATGGAAGTGCCCGCCGACGATGCGGCCGGCGCGGGCAACCCGTTCTGCTGGTCGGCGCAGTTC CGCAGGCTGCTCGGCTACCAGGACGAACGCGACTTTCCCGACGTGCTGTCCAGCTGGTCCGACCTGCTGCACCCGGAGGA CAAGCAGCGCACGCTGCAGGCCTTCGCCGCCCACATGCAGGACCGTTCCGGTCGCACGCCGTACGACGTGACCTACCGCC TGCGCTGCAAGGATGGCGTGTGCCGCTGGTTCCGTGCGCGGGGCGAGACGCTGCGCGCGGCCGACGGCACCCCCTTGCGC GTGGCGGGCACCCTCATTCCAATCGACGAGGACCTGAAGCTCCAGCAGGCGCTCGACGTGACGCACACGCGCTTCGAGCT GTCGCGCGAGATCGTCAACGACGGCGTCTGGGACCTGGCCGTGGTCGCCGGCGATCCGGTGAATCCCCGCAACGCGTTCT GGTGGTCGCCGCAGTTCCGCCGCCTGCTGGGCTTCGCCGACGAAGCCGAGTTCCCGAACGTGCTCGACAGCTGGGCGTCA CGCCTGCACCCGGAGGACAAGGACCGCACGATGACGGCCTTCGTGCAGCACCTGACCGACAAGACCGGCCGCACCCCCTA CGACGTCTGCTACCGGCTGCGGTGCAAGGACGACCGCTATCGCTGGTTCCGCGCCCGTGGCCAGACCCAGCGGGCCGCCG ACGGCACCGCGCTGCGGGCCGTCGGGGCCCTGGCCGACATCCAGGCCGAAAGGGACCGGGAGGAGGCCGAGCGGCAGCGT GTCAGGTACAACGCGCAGCTCGAATCCAGCCTGAAGGACATCGGCGACATCGTCGGCACGATCCAGCGCATCGCCCAGCA GACCAATCTGATCGCGATCAACGCCGCGGTGGAGGCCGCGCGAGCCGGCGAAGCGGGCCGTGGCTTCTCCGTCATCGCCA GCGAGATCCGCGCGCTGTCCAAGCGCACCAGCGACGCGACGAACGATGCCACACACATCCGGCAGAAGCTCGAAGACGGT CGACGCGAGTTGATCGCGCGCTGA
Upstream 100 bases:
>100_bases GCGGCGCGGCGCCGGGCCGCGGTCGGCCATGCGATGGACGACGTGGCGGTGTTCGCTGCGTTGAGGGCCTGGAAGGACCG CTTCGCATGAGGCCTCGACC
Downstream 100 bases:
>100_bases TCACCCCCCGACAGGACACCAGGAGACGCCATGAAGGCCGCCGTGCTGCACCAGTACAACGAGTCGCTGAGCGGCGACAG CTTCGTGCGCTACGGCGACG
Product: methyl-accepting chemotaxis protein
Products: NA
Alternate protein names: ORFE [H]
Number of amino acids: Translated: 407; Mature: 406
Protein sequence:
>407_residues MAMRVSFFRARRDAPQEPDEKGAEVARLHWQVAALQAEIQGLQMRFDLIRRASGEGLWDMEVPADDAAGAGNPFCWSAQF RRLLGYQDERDFPDVLSSWSDLLHPEDKQRTLQAFAAHMQDRSGRTPYDVTYRLRCKDGVCRWFRARGETLRAADGTPLR VAGTLIPIDEDLKLQQALDVTHTRFELSREIVNDGVWDLAVVAGDPVNPRNAFWWSPQFRRLLGFADEAEFPNVLDSWAS RLHPEDKDRTMTAFVQHLTDKTGRTPYDVCYRLRCKDDRYRWFRARGQTQRAADGTALRAVGALADIQAERDREEAERQR VRYNAQLESSLKDIGDIVGTIQRIAQQTNLIAINAAVEAARAGEAGRGFSVIASEIRALSKRTSDATNDATHIRQKLEDG RRELIAR
Sequences:
>Translated_407_residues MAMRVSFFRARRDAPQEPDEKGAEVARLHWQVAALQAEIQGLQMRFDLIRRASGEGLWDMEVPADDAAGAGNPFCWSAQF RRLLGYQDERDFPDVLSSWSDLLHPEDKQRTLQAFAAHMQDRSGRTPYDVTYRLRCKDGVCRWFRARGETLRAADGTPLR VAGTLIPIDEDLKLQQALDVTHTRFELSREIVNDGVWDLAVVAGDPVNPRNAFWWSPQFRRLLGFADEAEFPNVLDSWAS RLHPEDKDRTMTAFVQHLTDKTGRTPYDVCYRLRCKDDRYRWFRARGQTQRAADGTALRAVGALADIQAERDREEAERQR VRYNAQLESSLKDIGDIVGTIQRIAQQTNLIAINAAVEAARAGEAGRGFSVIASEIRALSKRTSDATNDATHIRQKLEDG RRELIAR >Mature_406_residues AMRVSFFRARRDAPQEPDEKGAEVARLHWQVAALQAEIQGLQMRFDLIRRASGEGLWDMEVPADDAAGAGNPFCWSAQFR RLLGYQDERDFPDVLSSWSDLLHPEDKQRTLQAFAAHMQDRSGRTPYDVTYRLRCKDGVCRWFRARGETLRAADGTPLRV AGTLIPIDEDLKLQQALDVTHTRFELSREIVNDGVWDLAVVAGDPVNPRNAFWWSPQFRRLLGFADEAEFPNVLDSWASR LHPEDKDRTMTAFVQHLTDKTGRTPYDVCYRLRCKDDRYRWFRARGQTQRAADGTALRAVGALADIQAERDREEAERQRV RYNAQLESSLKDIGDIVGTIQRIAQQTNLIAINAAVEAARAGEAGRGFSVIASEIRALSKRTSDATNDATHIRQKLEDGR RELIAR
Specific function: Mediates Taxis To The Sugars Ribose And Galactose VIa An Interaction With The Periplasmic Ribose- Or Galactose-Binding Proteins. Chemotactic-Signal Transducers Respond To Changes In The Concentration Of Attractants And Repellents In The Environment, Trans
COG id: COG0840
COG function: function code NT; Methyl-accepting chemotaxis protein
Gene ontology:
Cell location: Integral Membrane Protein. Inner Membrane [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1787690, Length=69, Percent_Identity=50.7246376811594, Blast_Score=73, Evalue=4e-14, Organism=Escherichia coli, GI1788195, Length=80, Percent_Identity=48.75, Blast_Score=72, Evalue=5e-14, Organism=Escherichia coli, GI1788194, Length=64, Percent_Identity=53.125, Blast_Score=71, Evalue=1e-13, Organism=Escherichia coli, GI2367378, Length=73, Percent_Identity=50.6849315068493, Blast_Score=71, Evalue=1e-13, Organism=Escherichia coli, GI1789453, Length=144, Percent_Identity=33.3333333333333, Blast_Score=71, Evalue=1e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001610 - InterPro: IPR013655 [H]
Pfam domain/function: PF08447 PAS_3 [H]
EC number: NA
Molecular weight: Translated: 46268; Mature: 46137
Theoretical pI: Translated: 7.17; Mature: 7.17
Prosite motif: PS50111 CHEMOTAXIS_TRANSDUC_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAMRVSFFRARRDAPQEPDEKGAEVARLHWQVAALQAEIQGLQMRFDLIRRASGEGLWDM CCEEHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEC EVPADDAAGAGNPFCWSAQFRRLLGYQDERDFPDVLSSWSDLLHPEDKQRTLQAFAAHMQ CCCCCCCCCCCCCCEEHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHH DRSGRTPYDVTYRLRCKDGVCRWFRARGETLRAADGTPLRVAGTLIPIDEDLKLQQALDV HCCCCCCCEEEEEEECCHHHHHHHHHCCCEEECCCCCCEEEEEEEECCCCCHHHHHHHHH THTRFELSREIVNDGVWDLAVVAGDPVNPRNAFWWSPQFRRLLGFADEAEFPNVLDSWAS HHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCEEECHHHHHHHCCCCCCCCCHHHHHHHH RLHPEDKDRTMTAFVQHLTDKTGRTPYDVCYRLRCKDDRYRWFRARGQTQRAADGTALRA HCCCCCCHHHHHHHHHHHHHCCCCCHHHHHEEEECCCCHHHHHHHCCCCCHHCCCHHHHH VGALADIQAERDREEAERQRVRYNAQLESSLKDIGDIVGTIQRIAQQTNLIAINAAVEAA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEHHHHHHH RAGEAGRGFSVIASEIRALSKRTSDATNDATHIRQKLEDGRRELIAR HCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure AMRVSFFRARRDAPQEPDEKGAEVARLHWQVAALQAEIQGLQMRFDLIRRASGEGLWDM CEEHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEC EVPADDAAGAGNPFCWSAQFRRLLGYQDERDFPDVLSSWSDLLHPEDKQRTLQAFAAHMQ CCCCCCCCCCCCCCEEHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHH DRSGRTPYDVTYRLRCKDGVCRWFRARGETLRAADGTPLRVAGTLIPIDEDLKLQQALDV HCCCCCCCEEEEEEECCHHHHHHHHHCCCEEECCCCCCEEEEEEEECCCCCHHHHHHHHH THTRFELSREIVNDGVWDLAVVAGDPVNPRNAFWWSPQFRRLLGFADEAEFPNVLDSWAS HHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCEEECHHHHHHHCCCCCCCCCHHHHHHHH RLHPEDKDRTMTAFVQHLTDKTGRTPYDVCYRLRCKDDRYRWFRARGQTQRAADGTALRA HCCCCCCHHHHHHHHHHHHHCCCCCHHHHHEEEECCCCHHHHHHHCCCCCHHCCCHHHHH VGALADIQAERDREEAERQRVRYNAQLESSLKDIGDIVGTIQRIAQQTNLIAINAAVEAA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEHHHHHHH RAGEAGRGFSVIASEIRALSKRTSDATNDATHIRQKLEDGRRELIAR HCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 2013568 [H]