| Definition | Methylibium petroleiphilum PM1 chromosome, complete genome. |
|---|---|
| Accession | NC_008825 |
| Length | 4,044,195 |
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The map label for this gene is doxJ [H]
Identifier: 124265937
GI number: 124265937
Start: 773198
End: 773803
Strand: Direct
Name: doxJ [H]
Synonym: Mpe_A0744
Alternate gene names: 124265937
Gene position: 773198-773803 (Clockwise)
Preceding gene: 124265936
Following gene: 124265939
Centisome position: 19.12
GC content: 67.0
Gene sequence:
>606_bases ATGAGCGCCGCGCCGATCGAGTTCTGGTTCGAGTTCGCCAGCAACTACAGCTACCTCAGCGTGATGCGCATCGAGGACTG CGCTGCCCGGCGCGGCGTGCAAGTCCGCTGGAAGCCCTTCCTGCTGGGGCCGATCTTCCGGAGCTTTGGCTGGCAGACAT CGCCCTTCGTGCTGCAGAAGGCCAAGGGCGACTACGTCTGGCAGGACATGGTGCGCCAGTGCCGCAAGTACGACCTGGCA TGGACCCGGCCCTCGGGCTTTCCCCGCTCGTCGCTGCTGCCCTCACGCGTGGCGCTCGTGGGGGCCGAGCAGGATTGGAT CGGCGCCTACTGCCGGCGCGTGATGTCGATCAACTTCGGCGAGGACCGGGAGATCGATACGAACAAGGTGGTGACGGAGG TGCTCACGGCGCTCGGCCTGCCGGCACGGCAGATCATCGACGAGGCGCAGTCCGAGGCCAACAAGCTGCGGCTGAGGCAG CAGACGGAGACGGCGGCGCGGCGAGGGATCTTCGGTGCGCCGATGTTCTTCGTGGGCGACGACATGTTCTGGGGCAACGA TCGCCTGGACGATGCCCTGGACCACTGCGTCCAGGCGCCGGCGTAG
Upstream 100 bases:
>100_bases TCACACCGCACACCGCCTTCGACCTGCCCGACATCCCCGCCGGCGCGCCGCTGCGCGAGAGCATCGAGCTGCGCTGCCTC GTGGTCTACGGAGACGCGCA
Downstream 100 bases:
>100_bases GGACGACTCAGGAACGCCGGGCGCGCGGCTTCGGTGCCGTCTGCGGGGGCGCGAGAGCGGGCTCGGCCGACATTCGCGCC TCGCTTTCTATCCACTCCGC
Product: 2-hydroxychromene-2-carboxylate isomerase family protein
Products: NA
Alternate protein names: HCCA isomerase [H]
Number of amino acids: Translated: 201; Mature: 200
Protein sequence:
>201_residues MSAAPIEFWFEFASNYSYLSVMRIEDCAARRGVQVRWKPFLLGPIFRSFGWQTSPFVLQKAKGDYVWQDMVRQCRKYDLA WTRPSGFPRSSLLPSRVALVGAEQDWIGAYCRRVMSINFGEDREIDTNKVVTEVLTALGLPARQIIDEAQSEANKLRLRQ QTETAARRGIFGAPMFFVGDDMFWGNDRLDDALDHCVQAPA
Sequences:
>Translated_201_residues MSAAPIEFWFEFASNYSYLSVMRIEDCAARRGVQVRWKPFLLGPIFRSFGWQTSPFVLQKAKGDYVWQDMVRQCRKYDLA WTRPSGFPRSSLLPSRVALVGAEQDWIGAYCRRVMSINFGEDREIDTNKVVTEVLTALGLPARQIIDEAQSEANKLRLRQ QTETAARRGIFGAPMFFVGDDMFWGNDRLDDALDHCVQAPA >Mature_200_residues SAAPIEFWFEFASNYSYLSVMRIEDCAARRGVQVRWKPFLLGPIFRSFGWQTSPFVLQKAKGDYVWQDMVRQCRKYDLAW TRPSGFPRSSLLPSRVALVGAEQDWIGAYCRRVMSINFGEDREIDTNKVVTEVLTALGLPARQIIDEAQSEANKLRLRQQ TETAARRGIFGAPMFFVGDDMFWGNDRLDDALDHCVQAPA
Specific function: Catalyzes the isomerization of 2-hydroxychromene-2- carboxylate (HCCA) to trans-O-hydroxybenzylidenepyruvate (THBPA). The reaction is reversible [H]
COG id: COG3917
COG function: function code Q; 2-hydroxychromene-2-carboxylate isomerase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001853 - InterPro: IPR014440 - InterPro: IPR012336 - InterPro: IPR012335 [H]
Pfam domain/function: PF01323 DSBA [H]
EC number: NA
Molecular weight: Translated: 22997; Mature: 22866
Theoretical pI: Translated: 7.92; Mature: 7.92
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAAPIEFWFEFASNYSYLSVMRIEDCAARRGVQVRWKPFLLGPIFRSFGWQTSPFVLQK CCCCHHHHHHHHHCCCCEEEEEHHHHHHHHCCCEEEECHHHHHHHHHHCCCCCCCHHEEC AKGDYVWQDMVRQCRKYDLAWTRPSGFPRSSLLPSRVALVGAEQDWIGAYCRRVMSINFG CCCCHHHHHHHHHHHHCCCCEECCCCCCCHHCCCHHHHEECCCHHHHHHHHHHHHHCCCC EDREIDTNKVVTEVLTALGLPARQIIDEAQSEANKLRLRQQTETAARRGIFGAPMFFVGD CCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHEECC DMFWGNDRLDDALDHCVQAPA CCCCCCCCHHHHHHHHHCCCC >Mature Secondary Structure SAAPIEFWFEFASNYSYLSVMRIEDCAARRGVQVRWKPFLLGPIFRSFGWQTSPFVLQK CCCHHHHHHHHHCCCCEEEEEHHHHHHHHCCCEEEECHHHHHHHHHHCCCCCCCHHEEC AKGDYVWQDMVRQCRKYDLAWTRPSGFPRSSLLPSRVALVGAEQDWIGAYCRRVMSINFG CCCCHHHHHHHHHHHHCCCCEECCCCCCCHHCCCHHHHEECCCHHHHHHHHHHHHHCCCC EDREIDTNKVVTEVLTALGLPARQIIDEAQSEANKLRLRQQTETAARRGIFGAPMFFVGD CCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHEECC DMFWGNDRLDDALDHCVQAPA CCCCCCCCHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8226631 [H]