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The map label for this gene is intD [H]

Identifier: 124265741

GI number: 124265741

Start: 582239

End: 583243

Strand: Reverse

Name: intD [H]

Synonym: Mpe_A0548

Alternate gene names: 124265741

Gene position: 583243-582239 (Counterclockwise)

Preceding gene: 124265743

Following gene: 124265740

Centisome position: 14.42

GC content: 67.26

Gene sequence:

>1005_bases
ATGAACTGTTCTGCACAGTCCACCGGTGACTTTGCGACGACGCCCGCCAGCGTCCCGCATACCGGCGTTCCACCACCGGC
ACCAGGTGTCCGGGACGGGTCTATCGCCCTCCGGCACCTGATTGATGCCTACATGGCCGCCTATGCCGGCCGCGACACCA
GCCGCACCCAGCGCCTCGATTGGTGGGTGGCCAAGCTCGGCGGCGTCTCGCTGGCCGATCTGACCGACGACCACGTCTTT
ACAGCCTTGGAGCAGCTCGCCACCCAGCGTGGCCGCTACTTCGCCGGCAAGGACGCCGACGGCAAGCCCGTCATGAAGGC
CAAGCGCAGGCCGCTGGCGCCCGCCACCCTGAACCGGTATCAGGCCGCTCTCTCCGCGGTGCTGACCTGGGCGCAGCGGC
GCCGCATCGCCCCGAAGAACTGGCAGAACCCCTGCCGGCACGTCGAGCTGAAGGCCGAGAAGAACGAGATCGTCCGCTTC
CTCAGCGATGCGGAGCGCACCGCCCTGCTCGCTGCCTGCCGGAAGTCGTCATGGCCCCGCCTCTACCTGCTGGTGATGAT
GGGGCTGACCACCGGTGCCCGTCGCGGCGAGCTGGAGGCCCTGCGCTGGGCCGACGTGGACCTTGAGCGGGCCGAGGCTG
CCGTGCACCGGTCCAAGAACGGCGACAAGAAGGTGCTGCCACTCGTCCCCGCCGTGGTCGACGAACTGGCCAAGCATGCC
GGCGCTGCGAACGCGCTGGTCTTCCCCTCGACGCGCAGACCTGACATTGCCTATAACTTCGATCCTGCTTGGGATCGCGC
CCTGAAAGCCGCGGGCGTCAAGAGCTTCAGGTTTCACGACCTGCGGCACTCATGCGCCTCTGCGCTGGCCCAGAACGGCG
CCACGCTGCTGGAAATCGCCGAGGTGCTGGGGCACCGGCAGTTGAGCGTCACGAAGCGCTACAGCCACCTCGCGACCGAC
CACAAGACCAAGCTCATCAATCGCGTGCTTGGCGACATTCGTTGA

Upstream 100 bases:

>100_bases
TCCCTGAAGCGCCACCAGATGCCAGCAAGGACGGGCCTTGCCAGACTCTCCACCTAGTCCGCCGGTGAACAAGGCGGGCA
AGATGCGATGAGGTCTTGCA

Downstream 100 bases:

>100_bases
TGATCATCCGGCGCATCAGCGGTCCTGGTGCAAGCGCGGCCGGAAGGTGCTGACACACCGACCGACCGCTGACCCTAACG
TGCAACCCTTAAAGGAATCG

Product: hypothetical protein

Products: NA

Alternate protein names: Prophage QSR' integrase [H]

Number of amino acids: Translated: 334; Mature: 334

Protein sequence:

>334_residues
MNCSAQSTGDFATTPASVPHTGVPPPAPGVRDGSIALRHLIDAYMAAYAGRDTSRTQRLDWWVAKLGGVSLADLTDDHVF
TALEQLATQRGRYFAGKDADGKPVMKAKRRPLAPATLNRYQAALSAVLTWAQRRRIAPKNWQNPCRHVELKAEKNEIVRF
LSDAERTALLAACRKSSWPRLYLLVMMGLTTGARRGELEALRWADVDLERAEAAVHRSKNGDKKVLPLVPAVVDELAKHA
GAANALVFPSTRRPDIAYNFDPAWDRALKAAGVKSFRFHDLRHSCASALAQNGATLLEIAEVLGHRQLSVTKRYSHLATD
HKTKLINRVLGDIR

Sequences:

>Translated_334_residues
MNCSAQSTGDFATTPASVPHTGVPPPAPGVRDGSIALRHLIDAYMAAYAGRDTSRTQRLDWWVAKLGGVSLADLTDDHVF
TALEQLATQRGRYFAGKDADGKPVMKAKRRPLAPATLNRYQAALSAVLTWAQRRRIAPKNWQNPCRHVELKAEKNEIVRF
LSDAERTALLAACRKSSWPRLYLLVMMGLTTGARRGELEALRWADVDLERAEAAVHRSKNGDKKVLPLVPAVVDELAKHA
GAANALVFPSTRRPDIAYNFDPAWDRALKAAGVKSFRFHDLRHSCASALAQNGATLLEIAEVLGHRQLSVTKRYSHLATD
HKTKLINRVLGDIR
>Mature_334_residues
MNCSAQSTGDFATTPASVPHTGVPPPAPGVRDGSIALRHLIDAYMAAYAGRDTSRTQRLDWWVAKLGGVSLADLTDDHVF
TALEQLATQRGRYFAGKDADGKPVMKAKRRPLAPATLNRYQAALSAVLTWAQRRRIAPKNWQNPCRHVELKAEKNEIVRF
LSDAERTALLAACRKSSWPRLYLLVMMGLTTGARRGELEALRWADVDLERAEAAVHRSKNGDKKVLPLVPAVVDELAKHA
GAANALVFPSTRRPDIAYNFDPAWDRALKAAGVKSFRFHDLRHSCASALAQNGATLLEIAEVLGHRQLSVTKRYSHLATD
HKTKLINRVLGDIR

Specific function: Integrase from the cryptic lambdoic prophage DLP12. Integrase is necessary for integration of the phage into the host genome by site-specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1786748, Length=303, Percent_Identity=24.7524752475248, Blast_Score=101, Evalue=6e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104 [H]

Pfam domain/function: PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 36819; Mature: 36819

Theoretical pI: Translated: 10.55; Mature: 10.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNCSAQSTGDFATTPASVPHTGVPPPAPGVRDGSIALRHLIDAYMAAYAGRDTSRTQRLD
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHH
WWVAKLGGVSLADLTDDHVFTALEQLATQRGRYFAGKDADGKPVMKAKRRPLAPATLNRY
HHHHHHCCCEEHHCCHHHHHHHHHHHHHHCCCEECCCCCCCCHHHHHCCCCCCHHHHHHH
QAALSAVLTWAQRRRIAPKNWQNPCRHVELKAEKNEIVRFLSDAERTALLAACRKSSWPR
HHHHHHHHHHHHHHCCCCCCCCCCHHEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCH
LYLLVMMGLTTGARRGELEALRWADVDLERAEAAVHRSKNGDKKVLPLVPAVVDELAKHA
HHHHHHHHHCCCCCCCCHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHC
GAANALVFPSTRRPDIAYNFDPAWDRALKAAGVKSFRFHDLRHSCASALAQNGATLLEIA
CCCCEEECCCCCCCCEEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHH
EVLGHRQLSVTKRYSHLATDHKTKLINRVLGDIR
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNCSAQSTGDFATTPASVPHTGVPPPAPGVRDGSIALRHLIDAYMAAYAGRDTSRTQRLD
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHH
WWVAKLGGVSLADLTDDHVFTALEQLATQRGRYFAGKDADGKPVMKAKRRPLAPATLNRY
HHHHHHCCCEEHHCCHHHHHHHHHHHHHHCCCEECCCCCCCCHHHHHCCCCCCHHHHHHH
QAALSAVLTWAQRRRIAPKNWQNPCRHVELKAEKNEIVRFLSDAERTALLAACRKSSWPR
HHHHHHHHHHHHHHCCCCCCCCCCHHEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCH
LYLLVMMGLTTGARRGELEALRWADVDLERAEAAVHRSKNGDKKVLPLVPAVVDELAKHA
HHHHHHHHHCCCCCCCCHHHHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHC
GAANALVFPSTRRPDIAYNFDPAWDRALKAAGVKSFRFHDLRHSCASALAQNGATLLEIA
CCCCEEECCCCCCCCEEECCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHH
EVLGHRQLSVTKRYSHLATDHKTKLINRVLGDIR
HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2553674; 2183007; 9278503 [H]