Definition Methylibium petroleiphilum PM1 chromosome, complete genome.
Accession NC_008825
Length 4,044,195

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The map label for this gene is 124265457

Identifier: 124265457

GI number: 124265457

Start: 286368

End: 286889

Strand: Reverse

Name: 124265457

Synonym: Mpe_A0264

Alternate gene names: NA

Gene position: 286889-286368 (Counterclockwise)

Preceding gene: 124265460

Following gene: 124265456

Centisome position: 7.09

GC content: 69.35

Gene sequence:

>522_bases
ATGACGCAATCGACGCGCCGCAAGTCCGTCCCCGCCCCCCGGGCCGCCCGACAGGAGGCCGCCCCCGCGAGCCGCGACGG
CCGGCGCATCCAGGTGCGGCGCTCCGGCGTGCACGGCAAGGGCGTCTTCGCGTTGCGGCCGCTGGCCAAGGGCGAGACGC
TGATCGAGTACACCGGCGAGGTGATCGACTGGCCCGAGGCGCTGCGCCGCCATCCGCACGACCCCACCGACCCGCACCAT
ACCTTCTACTTCAGCATCGATGAAGACCACGTGATCGACGCCAAGGTCGGCGGCAACGCGGCACGCTGGATCAACCACGC
CTGCGCCCCCAACTGCGAGGCCGACGAGACAGACGGCCGCGTGTTCATCAAGACGCTGCGTGCCGTCAAGGCCGGCGAGG
AGCTGTTCTACGATTACGGCCTGGTGATCGACGAGCGCTACACCCCCAAGCTGAAGAAGCAGTACGAATGCCGCTGCGGG
CACAAGGCCTGCCGCGGCACCATGCTCGCGCCCAAGCGCTGA

Upstream 100 bases:

>100_bases
GTCCCGCACGCCAACGCGGCGGGGCGTCCCTACAATCCGGGCTCTCGCGCGCACGCGCTCACGCGCGCGCACCCATGATT
CAATGTAGCCAAACTCGAAC

Downstream 100 bases:

>100_bases
CATCGTGCCCGACGCTGCCGTGCCTCCGCTACGCCGTGCCGTCGACGCGCCAGGCGCAGGCCTCGCGCCGCTGCGCTGGC
CGCTCGAGGCGCTGTGGGCA

Product: hypothetical protein

Products: NA

Alternate protein names: Histone-Lysine N-Methyltransferase; SET Domain-Containing Protein; SET Domain Protein; Set Domain Protein; HistoNe-Lysine N-Methyltransferase H3 Lysine-4 Specific; Setd1a Protein; Nuclear Protein Set; Zinc Finger Protein

Number of amino acids: Translated: 173; Mature: 172

Protein sequence:

>173_residues
MTQSTRRKSVPAPRAARQEAAPASRDGRRIQVRRSGVHGKGVFALRPLAKGETLIEYTGEVIDWPEALRRHPHDPTDPHH
TFYFSIDEDHVIDAKVGGNAARWINHACAPNCEADETDGRVFIKTLRAVKAGEELFYDYGLVIDERYTPKLKKQYECRCG
HKACRGTMLAPKR

Sequences:

>Translated_173_residues
MTQSTRRKSVPAPRAARQEAAPASRDGRRIQVRRSGVHGKGVFALRPLAKGETLIEYTGEVIDWPEALRRHPHDPTDPHH
TFYFSIDEDHVIDAKVGGNAARWINHACAPNCEADETDGRVFIKTLRAVKAGEELFYDYGLVIDERYTPKLKKQYECRCG
HKACRGTMLAPKR
>Mature_172_residues
TQSTRRKSVPAPRAARQEAAPASRDGRRIQVRRSGVHGKGVFALRPLAKGETLIEYTGEVIDWPEALRRHPHDPTDPHHT
FYFSIDEDHVIDAKVGGNAARWINHACAPNCEADETDGRVFIKTLRAVKAGEELFYDYGLVIDERYTPKLKKQYECRCGH
KACRGTMLAPKR

Specific function: Unknown

COG id: COG2940

COG function: function code R; Proteins containing SET domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI56550039, Length=140, Percent_Identity=37.8571428571429, Blast_Score=91, Evalue=4e-19,
Organism=Homo sapiens, GI55741677, Length=146, Percent_Identity=32.8767123287671, Blast_Score=91, Evalue=7e-19,
Organism=Homo sapiens, GI7662046, Length=140, Percent_Identity=37.1428571428571, Blast_Score=89, Evalue=2e-18,
Organism=Homo sapiens, GI210032580, Length=139, Percent_Identity=35.2517985611511, Blast_Score=89, Evalue=2e-18,
Organism=Homo sapiens, GI91718902, Length=143, Percent_Identity=34.965034965035, Blast_Score=87, Evalue=8e-18,
Organism=Homo sapiens, GI19913358, Length=138, Percent_Identity=36.9565217391304, Blast_Score=84, Evalue=9e-17,
Organism=Homo sapiens, GI19913350, Length=138, Percent_Identity=36.9565217391304, Blast_Score=84, Evalue=9e-17,
Organism=Homo sapiens, GI19913348, Length=138, Percent_Identity=36.9565217391304, Blast_Score=84, Evalue=9e-17,
Organism=Homo sapiens, GI109633019, Length=138, Percent_Identity=36.9565217391304, Blast_Score=84, Evalue=9e-17,
Organism=Homo sapiens, GI110349788, Length=139, Percent_Identity=34.5323741007194, Blast_Score=78, Evalue=5e-15,
Organism=Homo sapiens, GI21361095, Length=110, Percent_Identity=40.9090909090909, Blast_Score=77, Evalue=8e-15,
Organism=Homo sapiens, GI23510384, Length=110, Percent_Identity=40.9090909090909, Blast_Score=77, Evalue=9e-15,
Organism=Homo sapiens, GI224465233, Length=149, Percent_Identity=33.5570469798658, Blast_Score=74, Evalue=7e-14,
Organism=Homo sapiens, GI156142197, Length=149, Percent_Identity=32.2147651006711, Blast_Score=73, Evalue=1e-13,
Organism=Homo sapiens, GI156142199, Length=149, Percent_Identity=32.2147651006711, Blast_Score=73, Evalue=1e-13,
Organism=Homo sapiens, GI148762969, Length=143, Percent_Identity=34.2657342657343, Blast_Score=73, Evalue=1e-13,
Organism=Homo sapiens, GI19923586, Length=157, Percent_Identity=32.484076433121, Blast_Score=70, Evalue=7e-13,
Organism=Homo sapiens, GI4507321, Length=158, Percent_Identity=30.379746835443, Blast_Score=70, Evalue=7e-13,
Organism=Homo sapiens, GI197313748, Length=140, Percent_Identity=33.5714285714286, Blast_Score=70, Evalue=8e-13,
Organism=Homo sapiens, GI27477095, Length=157, Percent_Identity=32.484076433121, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI19923202, Length=110, Percent_Identity=40.9090909090909, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI13699811, Length=141, Percent_Identity=32.6241134751773, Blast_Score=65, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17552316, Length=146, Percent_Identity=36.3013698630137, Blast_Score=94, Evalue=3e-20,
Organism=Caenorhabditis elegans, GI17552320, Length=146, Percent_Identity=36.3013698630137, Blast_Score=94, Evalue=4e-20,
Organism=Caenorhabditis elegans, GI17552318, Length=146, Percent_Identity=36.3013698630137, Blast_Score=94, Evalue=4e-20,
Organism=Caenorhabditis elegans, GI193210440, Length=143, Percent_Identity=34.2657342657343, Blast_Score=80, Evalue=4e-16,
Organism=Caenorhabditis elegans, GI71993684, Length=140, Percent_Identity=30.7142857142857, Blast_Score=70, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI25141373, Length=137, Percent_Identity=35.036496350365, Blast_Score=70, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI193202392, Length=137, Percent_Identity=35.036496350365, Blast_Score=70, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17565204, Length=163, Percent_Identity=29.4478527607362, Blast_Score=67, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI71988186, Length=138, Percent_Identity=35.5072463768116, Blast_Score=63, Evalue=7e-11,
Organism=Saccharomyces cerevisiae, GI6321911, Length=138, Percent_Identity=39.1304347826087, Blast_Score=83, Evalue=3e-17,
Organism=Drosophila melanogaster, GI62472551, Length=140, Percent_Identity=36.4285714285714, Blast_Score=94, Evalue=6e-20,
Organism=Drosophila melanogaster, GI17136558, Length=140, Percent_Identity=36.4285714285714, Blast_Score=94, Evalue=6e-20,
Organism=Drosophila melanogaster, GI19550181, Length=140, Percent_Identity=36.4285714285714, Blast_Score=94, Evalue=6e-20,
Organism=Drosophila melanogaster, GI19550184, Length=140, Percent_Identity=36.4285714285714, Blast_Score=93, Evalue=7e-20,
Organism=Drosophila melanogaster, GI17136556, Length=140, Percent_Identity=36.4285714285714, Blast_Score=93, Evalue=7e-20,
Organism=Drosophila melanogaster, GI28571451, Length=143, Percent_Identity=34.965034965035, Blast_Score=87, Evalue=6e-18,
Organism=Drosophila melanogaster, GI24639197, Length=143, Percent_Identity=34.965034965035, Blast_Score=87, Evalue=6e-18,
Organism=Drosophila melanogaster, GI24650756, Length=149, Percent_Identity=33.5570469798658, Blast_Score=80, Evalue=8e-16,
Organism=Drosophila melanogaster, GI281360813, Length=140, Percent_Identity=33.5714285714286, Blast_Score=74, Evalue=7e-14,
Organism=Drosophila melanogaster, GI17737643, Length=162, Percent_Identity=30.8641975308642, Blast_Score=72, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24647050, Length=150, Percent_Identity=35.3333333333333, Blast_Score=69, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24641786, Length=141, Percent_Identity=31.9148936170213, Blast_Score=68, Evalue=3e-12,
Organism=Drosophila melanogaster, GI221331070, Length=120, Percent_Identity=38.3333333333333, Blast_Score=67, Evalue=5e-12,
Organism=Drosophila melanogaster, GI24662251, Length=120, Percent_Identity=38.3333333333333, Blast_Score=67, Evalue=5e-12,
Organism=Drosophila melanogaster, GI18543183, Length=135, Percent_Identity=33.3333333333333, Blast_Score=65, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19550; Mature: 19419

Theoretical pI: Translated: 9.46; Mature: 9.46

Prosite motif: PS50280 SET ; PS50868 POST_SET

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure: 

>Translated Secondary Structure
MTQSTRRKSVPAPRAARQEAAPASRDGRRIQVRRSGVHGKGVFALRPLAKGETLIEYTGE
CCCCCCCCCCCCCCHHHHHCCCCCCCCCEEEEEECCCCCCCEEEECCCCCCCEEEECCCC
VIDWPEALRRHPHDPTDPHHTFYFSIDEDHVIDAKVGGNAARWINHACAPNCEADETDGR
CCCCHHHHHCCCCCCCCCCEEEEEEECCCEEEEEECCCCHHHHHHHHCCCCCCCCCCCCH
VFIKTLRAVKAGEELFYDYGLVIDERYTPKLKKQYECRCGHKACRGTMLAPKR
HHHHHHHHHHHHHHHHHHCCEEECCCCCCHHHHHHHHHCCHHHHCCCCCCCCC
>Mature Secondary Structure 
TQSTRRKSVPAPRAARQEAAPASRDGRRIQVRRSGVHGKGVFALRPLAKGETLIEYTGE
CCCCCCCCCCCCCHHHHHCCCCCCCCCEEEEEECCCCCCCEEEECCCCCCCEEEECCCC
VIDWPEALRRHPHDPTDPHHTFYFSIDEDHVIDAKVGGNAARWINHACAPNCEADETDGR
CCCCHHHHHCCCCCCCCCCEEEEEEECCCEEEEEECCCCHHHHHHHHCCCCCCCCCCCCH
VFIKTLRAVKAGEELFYDYGLVIDERYTPKLKKQYECRCGHKACRGTMLAPKR
HHHHHHHHHHHHHHHHHHCCEEECCCCCCHHHHHHHHHCCHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA