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The map label for this gene is exbD1 [H]

Identifier: 124265412

GI number: 124265412

Start: 238168

End: 238605

Strand: Reverse

Name: exbD1 [H]

Synonym: Mpe_A0219

Alternate gene names: 124265412

Gene position: 238605-238168 (Counterclockwise)

Preceding gene: 124265413

Following gene: 124265411

Centisome position: 5.9

GC content: 70.32

Gene sequence:

>438_bases
ATGGCCTTCGGTCGCCTGGAGCGCACCGCGCTGCCGCAGCCGATGAGCGACATCAACATGACGCCGCTGATCGACGTGAT
GCTGGTGCTGCTGGTGATCTTCATGATCAGTGCCCCGCTGATGACCTCGAGCCTGCGCCTCGACCTGCCCCGGGCCGATA
CCGCAACGCCCAGCGACACGCCCAGCTTCGTCAGCGTCGCGCTCACGCCCGACGGCGCACTCCATTTAGGCGACGAGGCC
CTGGCCGACGCCGCCTTCGACGCCCGCATCCGCGAAGCCGCCCGGCGCCAGCCCGGTCTGGAGGTGCAGTTGCGCGCCGA
CCAGTCCGTGCCCTACGGCCGCGTGGCCGCGCTGATCGGCCGACTGCAGAGCGCCGGCCTCAACCGCATCGCCTTCGTCG
CGCAACCCACCGAGGCCGCGTCGCCTTCCTCGAACTGA

Upstream 100 bases:

>100_bases
CTGCGAGGCCGAACTCGAGGGCTTCGCTCACGACCTGCGCGAGATGCTGCTCGACGACGCCTCGGCGCCCCGCCCGGGCA
CCGAGCGAGGCTGAACCGTC

Downstream 100 bases:

>100_bases
GCGCCACGGCACGCCCGTCGTCCTCGACGGGTCGCGCCCTAGAATCCATCGACTTTCCCGAGACGGCGCCATCGCAGCGC
CCGTGCCCTGCATGAGCACC

Product: putative transport-related membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 145; Mature: 144

Protein sequence:

>145_residues
MAFGRLERTALPQPMSDINMTPLIDVMLVLLVIFMISAPLMTSSLRLDLPRADTATPSDTPSFVSVALTPDGALHLGDEA
LADAAFDARIREAARRQPGLEVQLRADQSVPYGRVAALIGRLQSAGLNRIAFVAQPTEAASPSSN

Sequences:

>Translated_145_residues
MAFGRLERTALPQPMSDINMTPLIDVMLVLLVIFMISAPLMTSSLRLDLPRADTATPSDTPSFVSVALTPDGALHLGDEA
LADAAFDARIREAARRQPGLEVQLRADQSVPYGRVAALIGRLQSAGLNRIAFVAQPTEAASPSSN
>Mature_144_residues
AFGRLERTALPQPMSDINMTPLIDVMLVLLVIFMISAPLMTSSLRLDLPRADTATPSDTPSFVSVALTPDGALHLGDEAL
ADAAFDARIREAARRQPGLEVQLRADQSVPYGRVAALIGRLQSAGLNRIAFVAQPTEAASPSSN

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=130, Percent_Identity=34.6153846153846, Blast_Score=80, Evalue=5e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 15440; Mature: 15309

Theoretical pI: Translated: 4.80; Mature: 4.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFGRLERTALPQPMSDINMTPLIDVMLVLLVIFMISAPLMTSSLRLDLPRADTATPSDT
CCCCCCCHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHCHHEEECCCCCCCCCCCC
PSFVSVALTPDGALHLGDEALADAAFDARIREAARRQPGLEVQLRADQSVPYGRVAALIG
CCEEEEEECCCCCEEECHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHH
RLQSAGLNRIAFVAQPTEAASPSSN
HHHHCCCCEEEEEECCCCCCCCCCC
>Mature Secondary Structure 
AFGRLERTALPQPMSDINMTPLIDVMLVLLVIFMISAPLMTSSLRLDLPRADTATPSDT
CCCCCCHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHCHHEEECCCCCCCCCCCC
PSFVSVALTPDGALHLGDEALADAAFDARIREAARRQPGLEVQLRADQSVPYGRVAALIG
CCEEEEEECCCCCEEECHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHH
RLQSAGLNRIAFVAQPTEAASPSSN
HHHHCCCCEEEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9371459 [H]