Definition Methylibium petroleiphilum PM1 chromosome, complete genome.
Accession NC_008825
Length 4,044,195

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The map label for this gene is yidB [H]

Identifier: 124265392

GI number: 124265392

Start: 213943

End: 214359

Strand: Reverse

Name: yidB [H]

Synonym: Mpe_A0199

Alternate gene names: 124265392

Gene position: 214359-213943 (Counterclockwise)

Preceding gene: 124265393

Following gene: 124265376

Centisome position: 5.3

GC content: 70.98

Gene sequence:

>417_bases
ATGGGTTTGCTGGACTCGGTGATCGGAGCCCTGGGCGGCTCTCAGGCGAACGGGCAAGGCGACGCGCTGCAGGCGGTGAT
CGCGATGCTGGCGCGCGGTGGACAGGGAGGCGGCGGGCTCGAGGGCCTGGTGCAGCAGTTCCAGCAGGGCGGCCTGGGCG
ACCTGATCGCCTCGTGGGTCGGCACTGGCCAGAACCTGCCGGTGTCCGCCAGCCAGCTGCAGGACGTGCTGGGCAGCGAC
ATGCTGTCGCAGTTCGCCCAGCAGCTTGGCCTGCCTCCGGGGGAGGCGGCCGGTCAACTGTCGCAGCTGCTGCCGCAGGT
GGTGGACAAGCTCACGCCCAATGGCCAGCTGTCCGACATCGGCAGCTCCGGGCTGGGCGACCTGGGCAGCGTGCTGGAGC
GGTTCAGCCGGCCCTGA

Upstream 100 bases:

>100_bases
TGAGCCCGCGCGGGCACCGTACGCTGCCGAGGGACTCTGCGCCGCCGCTCGCCTGCGAGCCTCACAATCGGCGCGGGGAC
GGTCCCCGCGGGAGCACGTG

Downstream 100 bases:

>100_bases
AGAAACGACAAGGCCCGCACGCGGCGGGCCTGGTGTCGTGTGCGGACCGACGGCGAAACAGCCCGCCGCCCCGACCTCCG
CGCCTTACTTCTTGCGGAAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 138; Mature: 137

Protein sequence:

>138_residues
MGLLDSVIGALGGSQANGQGDALQAVIAMLARGGQGGGGLEGLVQQFQQGGLGDLIASWVGTGQNLPVSASQLQDVLGSD
MLSQFAQQLGLPPGEAAGQLSQLLPQVVDKLTPNGQLSDIGSSGLGDLGSVLERFSRP

Sequences:

>Translated_138_residues
MGLLDSVIGALGGSQANGQGDALQAVIAMLARGGQGGGGLEGLVQQFQQGGLGDLIASWVGTGQNLPVSASQLQDVLGSD
MLSQFAQQLGLPPGEAAGQLSQLLPQVVDKLTPNGQLSDIGSSGLGDLGSVLERFSRP
>Mature_137_residues
GLLDSVIGALGGSQANGQGDALQAVIAMLARGGQGGGGLEGLVQQFQQGGLGDLIASWVGTGQNLPVSASQLQDVLGSDM
LSQFAQQLGLPPGEAAGQLSQLLPQVVDKLTPNGQLSDIGSSGLGDLGSVLERFSRP

Specific function: Unknown

COG id: COG3753

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87082321, Length=119, Percent_Identity=33.6134453781513, Blast_Score=67, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009282 [H]

Pfam domain/function: PF06078 DUF937 [H]

EC number: NA

Molecular weight: Translated: 13780; Mature: 13649

Theoretical pI: Translated: 3.78; Mature: 3.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLLDSVIGALGGSQANGQGDALQAVIAMLARGGQGGGGLEGLVQQFQQGGLGDLIASWV
CCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCHHHHHHHHH
GTGQNLPVSASQLQDVLGSDMLSQFAQQLGLPPGEAAGQLSQLLPQVVDKLTPNGQLSDI
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHC
GSSGLGDLGSVLERFSRP
CCCCCCHHHHHHHHHCCC
>Mature Secondary Structure 
GLLDSVIGALGGSQANGQGDALQAVIAMLARGGQGGGGLEGLVQQFQQGGLGDLIASWV
CHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCCHHHHHHHHH
GTGQNLPVSASQLQDVLGSDMLSQFAQQLGLPPGEAAGQLSQLLPQVVDKLTPNGQLSDI
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHC
GSSGLGDLGSVLERFSRP
CCCCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3029692; 7686882; 9278503 [H]