| Definition | Methylibium petroleiphilum PM1 chromosome, complete genome. |
|---|---|
| Accession | NC_008825 |
| Length | 4,044,195 |
Click here to switch to the map view.
The map label for this gene is ybhO [H]
Identifier: 124265240
GI number: 124265240
Start: 44687
End: 45937
Strand: Reverse
Name: ybhO [H]
Synonym: Mpe_A0047
Alternate gene names: 124265240
Gene position: 45937-44687 (Counterclockwise)
Preceding gene: 124265241
Following gene: 124265239
Centisome position: 1.14
GC content: 71.22
Gene sequence:
>1251_bases GTGAGCGCGCCACGCTGGGTCGACGGCAACCGCTTCACGCTGCTGGAGAACGGCGAGGCCTACTTCCCGCGCGTGTTCGA GGCCATCGCCGCGGCGCGCCACGAGGTGTTGCTGGAGACCTTCATCCTGTTCGAGGACAAGGTCGGGCTCGCGCTGCATG CCGCGCTGCTGTCGGCGGCACGCAATGGCGCGAAGGTCGACATCACGATCGACGGCTTCGGCTCGCCCGACCTGTCGCCG GCCTTCATCGGCGCGCTCACCGAGGCCGGCGTGCGCGTGCACGTGTTCGACCCCGGCACGCGGCTGTTCGGCTGGCGCAC CAACCTGTTCCGCCGCATGCACCGCAAGATCGTGGTGGTGGACGGCGAGCGCGCCTTCGTCGGCGGCATCAACTATTCGG CCGATCACCTGGCCGACTTCGGGCCCGAGGCCAAGCAGGACTACGCGGTGGAGCTGGAAGGCCCGCTGGTGGCGCACATC CAGCGCTTCGTGCAGCAGGCCATCGTCGAAGGGCGCCCGGGCCGGTCCTCCTCGGAGCGCCGCTGGTTCCGACGTCGCGC ACCGCCGTCGGCGCTGCCGCCGCAGGCCGCCGCCGGCGCCGCCCAGGCGATGTTCGTCACGCGCGACAACCGCGAGCACC CGCAGGACATCGAGCGCCACTACCGCGCCGTGATCCGCGCCGCGCGCCACCGTCTGGTGATCGCCAATGCCTACTTCTTC CCCGGCTACCGGTTGCTGAGGGAGCTGCGCCGGGCGGCGCGGCGGGGCGTGCAGGTCTCGCTGATCCTGCAGGGCGAGCC CGACATGGCCATCGTCAAGAGCGCCGCGGAGATGCTGTACCACCACCTGCTGCGCGCCGGCGTGCACATCTACGAGTACT GCGAGCGCCCGCTGCACGGCAAGGTGGCAGTGGCCGACGACGAGTGGTCCACCGTGGGCTCCAGCAACCTCGATCCGCTG AGCCTGTCGCTCAACCTCGAGGCCAACGTGATGATCCGCGACCGGGACTTCAACCGCCAGCTGGGCGAGCGGCTCGATCA CCTGATGGCCCACTGCTGCAAGCGCATCGAGGCCACCGACCTGCAGGAGTCCAGCCTGTGGCGGCTGGTGCGCAGCTTCT TCGTCTTCCACTTCCTGCGCCGCTACCCGGCGTGGGCCGGCTGGCTGCCGGCGCATGCGCCCCGGCTCAGCTCGGTGTCG CACGCGCCGGCCGCCGGCGCCGAGCGGCTCACCGAGCCGGCGCGGAGCTGA
Upstream 100 bases:
>100_bases TCTACGTGCGCAACGCCGCGGTGCACGCACCCATGGTGCTGCCGCGCAGGCCGTGGTCGCACCTGTCGGACCATGCGCCG CTGGCAGCGGAGATCTCGCT
Downstream 100 bases:
>100_bases CGGCGGTGGCGGCCGGGCCGGCCTCCGCGACGGCGATGCCCCGGCGCACCGCGGCCGGACCGCGCCACGCTGCGGGCGGG CGACGCGGCCTCACGTCGCG
Product: cardiolipin synthase 2
Products: cardiolipin; glycerol [C]
Alternate protein names: CL synthase [H]
Number of amino acids: Translated: 416; Mature: 415
Protein sequence:
>416_residues MSAPRWVDGNRFTLLENGEAYFPRVFEAIAAARHEVLLETFILFEDKVGLALHAALLSAARNGAKVDITIDGFGSPDLSP AFIGALTEAGVRVHVFDPGTRLFGWRTNLFRRMHRKIVVVDGERAFVGGINYSADHLADFGPEAKQDYAVELEGPLVAHI QRFVQQAIVEGRPGRSSSERRWFRRRAPPSALPPQAAAGAAQAMFVTRDNREHPQDIERHYRAVIRAARHRLVIANAYFF PGYRLLRELRRAARRGVQVSLILQGEPDMAIVKSAAEMLYHHLLRAGVHIYEYCERPLHGKVAVADDEWSTVGSSNLDPL SLSLNLEANVMIRDRDFNRQLGERLDHLMAHCCKRIEATDLQESSLWRLVRSFFVFHFLRRYPAWAGWLPAHAPRLSSVS HAPAAGAERLTEPARS
Sequences:
>Translated_416_residues MSAPRWVDGNRFTLLENGEAYFPRVFEAIAAARHEVLLETFILFEDKVGLALHAALLSAARNGAKVDITIDGFGSPDLSP AFIGALTEAGVRVHVFDPGTRLFGWRTNLFRRMHRKIVVVDGERAFVGGINYSADHLADFGPEAKQDYAVELEGPLVAHI QRFVQQAIVEGRPGRSSSERRWFRRRAPPSALPPQAAAGAAQAMFVTRDNREHPQDIERHYRAVIRAARHRLVIANAYFF PGYRLLRELRRAARRGVQVSLILQGEPDMAIVKSAAEMLYHHLLRAGVHIYEYCERPLHGKVAVADDEWSTVGSSNLDPL SLSLNLEANVMIRDRDFNRQLGERLDHLMAHCCKRIEATDLQESSLWRLVRSFFVFHFLRRYPAWAGWLPAHAPRLSSVS HAPAAGAERLTEPARS >Mature_415_residues SAPRWVDGNRFTLLENGEAYFPRVFEAIAAARHEVLLETFILFEDKVGLALHAALLSAARNGAKVDITIDGFGSPDLSPA FIGALTEAGVRVHVFDPGTRLFGWRTNLFRRMHRKIVVVDGERAFVGGINYSADHLADFGPEAKQDYAVELEGPLVAHIQ RFVQQAIVEGRPGRSSSERRWFRRRAPPSALPPQAAAGAAQAMFVTRDNREHPQDIERHYRAVIRAARHRLVIANAYFFP GYRLLRELRRAARRGVQVSLILQGEPDMAIVKSAAEMLYHHLLRAGVHIYEYCERPLHGKVAVADDEWSTVGSSNLDPLS LSLNLEANVMIRDRDFNRQLGERLDHLMAHCCKRIEATDLQESSLWRLVRSFFVFHFLRRYPAWAGWLPAHAPRLSSVSH APAAGAERLTEPARS
Specific function: Catalyzes, in vitro, the phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol [H]
COG id: COG1502
COG function: function code I; Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes
Gene ontology:
Cell location: Cell membrane; Peripheral membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 PLD phosphodiesterase domains [H]
Homologues:
Organism=Escherichia coli, GI1787007, Length=397, Percent_Identity=56.4231738035265, Blast_Score=446, Evalue=1e-127, Organism=Escherichia coli, GI1787502, Length=386, Percent_Identity=27.720207253886, Blast_Score=107, Evalue=1e-24,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001736 [H]
Pfam domain/function: PF00614 PLDc [H]
EC number: 2.7.8.- [C]
Molecular weight: Translated: 46829; Mature: 46698
Theoretical pI: Translated: 9.67; Mature: 9.67
Prosite motif: PS50035 PLD
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAPRWVDGNRFTLLENGEAYFPRVFEAIAAARHEVLLETFILFEDKVGLALHAALLSAA CCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH RNGAKVDITIDGFGSPDLSPAFIGALTEAGVRVHVFDPGTRLFGWRTNLFRRMHRKIVVV CCCCEEEEEEECCCCCCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHCCEEEEE DGERAFVGGINYSADHLADFGPEAKQDYAVELEGPLVAHIQRFVQQAIVEGRPGRSSSER ECCEEEECCCCCCHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCCCCHHH RWFRRRAPPSALPPQAAAGAAQAMFVTRDNREHPQDIERHYRAVIRAARHRLVIANAYFF HHHHHCCCCCCCCCCHHCCCHHEEEEECCCCCCHHHHHHHHHHHHHHHHCEEEEEEEEEC PGYRLLRELRRAARRGVQVSLILQGEPDMAIVKSAAEMLYHHLLRAGVHIYEYCERPLHG CCHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCC KVAVADDEWSTVGSSNLDPLSLSLNLEANVMIRDRDFNRQLGERLDHLMAHCCKRIEATD CEEEECCCCCCCCCCCCCCEEEEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCC LQESSLWRLVRSFFVFHFLRRYPAWAGWLPAHAPRLSSVSHAPAAGAERLTEPARS CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCC >Mature Secondary Structure SAPRWVDGNRFTLLENGEAYFPRVFEAIAAARHEVLLETFILFEDKVGLALHAALLSAA CCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH RNGAKVDITIDGFGSPDLSPAFIGALTEAGVRVHVFDPGTRLFGWRTNLFRRMHRKIVVV CCCCEEEEEEECCCCCCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHCCEEEEE DGERAFVGGINYSADHLADFGPEAKQDYAVELEGPLVAHIQRFVQQAIVEGRPGRSSSER ECCEEEECCCCCCHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCCCCHHH RWFRRRAPPSALPPQAAAGAAQAMFVTRDNREHPQDIERHYRAVIRAARHRLVIANAYFF HHHHHCCCCCCCCCCHHCCCHHEEEEECCCCCCHHHHHHHHHHHHHHHHCEEEEEEEEEC PGYRLLRELRRAARRGVQVSLILQGEPDMAIVKSAAEMLYHHLLRAGVHIYEYCERPLHG CCHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCC KVAVADDEWSTVGSSNLDPLSLSLNLEANVMIRDRDFNRQLGERLDHLMAHCCKRIEATD CEEEECCCCCCCCCCCCCCEEEEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCC LQESSLWRLVRSFFVFHFLRRYPAWAGWLPAHAPRLSSVSHAPAAGAERLTEPARS CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: 2 L-1-phosphatidyl-glycerol [C]
Specific reaction: 2 L-1-phosphatidyl-glycerol = cardiolipin + glycerol [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11677608; 12644504 [H]