Click here to switch to the map view.

The map label for this gene is rbcR [H]

Identifier: 124024356

GI number: 124024356

Start: 2354392

End: 2355363

Strand: Reverse

Name: rbcR [H]

Synonym: P9303_26681

Alternate gene names: 124024356

Gene position: 2355363-2354392 (Counterclockwise)

Preceding gene: 124024368

Following gene: 124024353

Centisome position: 87.8

GC content: 53.81

Gene sequence:

>972_bases
ATGGCCGATCTGCCTTTCACACTCGATCAGTTGCGCATCCTCCACGCAATCGTGAGTGAGGGCAGCTTTAAGAAAGCAGC
CGATAGCCTTTACGTCACTCAGCCGGCGGTGAGCCTGCAGATTCAGAACCTGGAGAAGCAGTTAGAGGTCTCCTTGTTTG
ATCGTGGGGGCCGCAAGGCTCAGCTAACCGAAGCGGGCCGACTTCTGTTGAGCTACTGCGAGCGGATTCTTAGTCAGTGT
CAGGAAGCCTGCCGAGCCCTTGATGATCTGCATGACCTCAAAGGTGGATCGTTAGTGATTGGGGCTAGCCAGACGACTGG
CACCTATTTGATGCCGCGCATGATTGGCTTATTTCGCCAAAAGTATCCTGACGTGGCCGTGCAATTGCAAGTGCACAGCA
CCCGACGCACCGGCTGGAGCATTGCCAATGGTCAAATTGATCTAGCGATCATTGGCGGCGAGCTGCCATCGGAGCTCAAC
GAACTTCTTCAGGTTGTGCCTTACGCCAGCGATGAACTGGCCCTGGTTCTTCCGGTGAAACATCCTTTGTCGAGGCTTGT
TGAACTCACCAAGGAAGATCTCTATCGCTTGGGTTTTATCAGTCTTGATTCCCAGTCCACCACTCGCAAGATGCTGGATC
AGCTCCTAGCTCGATCTGGCTTGGATGTGCAGCGCTTGCGGATAGAGATGGAGCTCAATTCTCTTGAGGCGATCAAGAAT
GCAGTTCAATCTGGTCTTGGGGCAGCCTTTTTGCCTGTGGTATCGATTGAACGTGAACTAACCGCCGGCACAGTGCACAA
ACCGTTGGTGGTTGATCTGCAGGTGCGTCGTCAGCTGAAGTTGATCAGCCATCCTGCGCGTTACTGTTCACGCGCAGCAG
AAGCATTTAGGCGGGATGTGCTGCCAGTGTTTGCTAGTGCCGACAGCCCCATTCGTCAGAACAGGGCCGTTCTTGCAGAT
GGCAATGGTTAA

Upstream 100 bases:

>100_bases
CAATTGTGCCAAGCGGCAGTGGCAATGATTATCGATTCTGGCGTCCAGGCTTTTCCGCTTAAAGTTTTTCGGTTGTTGCT
GCCGGGTTGGCAGGTCCTCC

Downstream 100 bases:

>100_bases
GAGTCGACTCAGAATTGATCTGCTTCCGGTGTTACGCCCACGGAATCGTCAGCAACTCCTTTAGTAATAAATTTATTCTC
TCTGATATCGGTTTGGTAGA

Product: Rubisco transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 323; Mature: 322

Protein sequence:

>323_residues
MADLPFTLDQLRILHAIVSEGSFKKAADSLYVTQPAVSLQIQNLEKQLEVSLFDRGGRKAQLTEAGRLLLSYCERILSQC
QEACRALDDLHDLKGGSLVIGASQTTGTYLMPRMIGLFRQKYPDVAVQLQVHSTRRTGWSIANGQIDLAIIGGELPSELN
ELLQVVPYASDELALVLPVKHPLSRLVELTKEDLYRLGFISLDSQSTTRKMLDQLLARSGLDVQRLRIEMELNSLEAIKN
AVQSGLGAAFLPVVSIERELTAGTVHKPLVVDLQVRRQLKLISHPARYCSRAAEAFRRDVLPVFASADSPIRQNRAVLAD
GNG

Sequences:

>Translated_323_residues
MADLPFTLDQLRILHAIVSEGSFKKAADSLYVTQPAVSLQIQNLEKQLEVSLFDRGGRKAQLTEAGRLLLSYCERILSQC
QEACRALDDLHDLKGGSLVIGASQTTGTYLMPRMIGLFRQKYPDVAVQLQVHSTRRTGWSIANGQIDLAIIGGELPSELN
ELLQVVPYASDELALVLPVKHPLSRLVELTKEDLYRLGFISLDSQSTTRKMLDQLLARSGLDVQRLRIEMELNSLEAIKN
AVQSGLGAAFLPVVSIERELTAGTVHKPLVVDLQVRRQLKLISHPARYCSRAAEAFRRDVLPVFASADSPIRQNRAVLAD
GNG
>Mature_322_residues
ADLPFTLDQLRILHAIVSEGSFKKAADSLYVTQPAVSLQIQNLEKQLEVSLFDRGGRKAQLTEAGRLLLSYCERILSQCQ
EACRALDDLHDLKGGSLVIGASQTTGTYLMPRMIGLFRQKYPDVAVQLQVHSTRRTGWSIANGQIDLAIIGGELPSELNE
LLQVVPYASDELALVLPVKHPLSRLVELTKEDLYRLGFISLDSQSTTRKMLDQLLARSGLDVQRLRIEMELNSLEAIKNA
VQSGLGAAFLPVVSIERELTAGTVHKPLVVDLQVRRQLKLISHPARYCSRAAEAFRRDVLPVFASADSPIRQNRAVLADG
NG

Specific function: Trans-acting transcriptional regulator of RuBisCO genes (rbcL and rbcS) expression [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788481, Length=291, Percent_Identity=32.3024054982818, Blast_Score=124, Evalue=7e-30,
Organism=Escherichia coli, GI157672245, Length=237, Percent_Identity=31.6455696202532, Blast_Score=121, Evalue=5e-29,
Organism=Escherichia coli, GI145693105, Length=289, Percent_Identity=26.2975778546713, Blast_Score=100, Evalue=9e-23,
Organism=Escherichia coli, GI1787530, Length=304, Percent_Identity=26.6447368421053, Blast_Score=98, Evalue=7e-22,
Organism=Escherichia coli, GI1790399, Length=293, Percent_Identity=27.6450511945392, Blast_Score=94, Evalue=8e-21,
Organism=Escherichia coli, GI1788296, Length=244, Percent_Identity=28.6885245901639, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI87082132, Length=257, Percent_Identity=28.7937743190661, Blast_Score=92, Evalue=5e-20,
Organism=Escherichia coli, GI1787879, Length=250, Percent_Identity=30.4, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1788748, Length=294, Percent_Identity=28.2312925170068, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1788887, Length=197, Percent_Identity=30.9644670050761, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1789204, Length=258, Percent_Identity=27.1317829457364, Blast_Score=81, Evalue=9e-17,
Organism=Escherichia coli, GI1788297, Length=259, Percent_Identity=26.6409266409266, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI87082024, Length=277, Percent_Identity=27.7978339350181, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI87081904, Length=181, Percent_Identity=32.0441988950276, Blast_Score=75, Evalue=7e-15,
Organism=Escherichia coli, GI1788626, Length=257, Percent_Identity=29.1828793774319, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1790208, Length=241, Percent_Identity=29.4605809128631, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1789173, Length=314, Percent_Identity=29.6178343949045, Blast_Score=69, Evalue=6e-13,
Organism=Escherichia coli, GI1786401, Length=261, Percent_Identity=27.5862068965517, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1790262, Length=263, Percent_Identity=26.9961977186312, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1789639, Length=122, Percent_Identity=30.327868852459, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1786448, Length=268, Percent_Identity=30.9701492537313, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI48994962, Length=115, Percent_Identity=34.7826086956522, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1789492, Length=270, Percent_Identity=27.4074074074074, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1787128, Length=127, Percent_Identity=32.2834645669291, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1789506, Length=252, Percent_Identity=26.984126984127, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 35661; Mature: 35530

Theoretical pI: Translated: 7.98; Mature: 7.98

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADLPFTLDQLRILHAIVSEGSFKKAADSLYVTQPAVSLQIQNLEKQLEVSLFDRGGRKA
CCCCCCHHHHHHHHHHHHCCCCHHHHHCCEEEECCHHHHHHHHHHHHHHHHHHCCCCCEE
QLTEAGRLLLSYCERILSQCQEACRALDDLHDLKGGSLVIGASQTTGTYLMPRMIGLFRQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHH
KYPDVAVQLQVHSTRRTGWSIANGQIDLAIIGGELPSELNELLQVVPYASDELALVLPVK
CCCCEEEEEEEECCCCCCCEEECCEEEEEEECCCCHHHHHHHHHHCCCCCCCEEEEEECH
HPLSRLVELTKEDLYRLGFISLDSQSTTRKMLDQLLARSGLDVQRLRIEMELNSLEAIKN
HHHHHHHHHHHHHHHHHCEEEECCCHHHHHHHHHHHHHCCCCHHHEEEEHHHHHHHHHHH
AVQSGLGAAFLPVVSIERELTAGTVHKPLVVDLQVRRQLKLISHPARYCSRAAEAFRRDV
HHHHCCCHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LPVFASADSPIRQNRAVLADGNG
HHHHHCCCCCHHHCCEEEECCCC
>Mature Secondary Structure 
ADLPFTLDQLRILHAIVSEGSFKKAADSLYVTQPAVSLQIQNLEKQLEVSLFDRGGRKA
CCCCCHHHHHHHHHHHHCCCCHHHHHCCEEEECCHHHHHHHHHHHHHHHHHHCCCCCEE
QLTEAGRLLLSYCERILSQCQEACRALDDLHDLKGGSLVIGASQTTGTYLMPRMIGLFRQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHH
KYPDVAVQLQVHSTRRTGWSIANGQIDLAIIGGELPSELNELLQVVPYASDELALVLPVK
CCCCEEEEEEEECCCCCCCEEECCEEEEEEECCCCHHHHHHHHHHCCCCCCCEEEEEECH
HPLSRLVELTKEDLYRLGFISLDSQSTTRKMLDQLLARSGLDVQRLRIEMELNSLEAIKN
HHHHHHHHHHHHHHHHHCEEEECCCHHHHHHHHHHHHHCCCCHHHEEEEHHHHHHHHHHH
AVQSGLGAAFLPVVSIERELTAGTVHKPLVVDLQVRRQLKLISHPARYCSRAAEAFRRDV
HHHHCCCHHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LPVFASADSPIRQNRAVLADGNG
HHHHHCCCCCHHHCCEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA