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The map label for this gene is pds [H]

Identifier: 124024353

GI number: 124024353

Start: 2351859

End: 2353277

Strand: Reverse

Name: pds [H]

Synonym: P9303_26651

Alternate gene names: 124024353

Gene position: 2353277-2351859 (Counterclockwise)

Preceding gene: 124024356

Following gene: 124024352

Centisome position: 87.72

GC content: 51.37

Gene sequence:

>1419_bases
ATGCGCGTTGCCATCGCAGGAGCAGGTCTGGCTGGACTCTCATGTGCCAAATATCTAGTTGATGCGGGACATATTCCAGT
TGTTTATGAGTCCCGCGATGTGCTTGGGGGCAAAGTTGCGGCTTGGAAGGATGAGGATGGTGACTGGTATGAGACTGGTT
TACATATCTTTTTTGGGGCTTATCCAAATATGCTCCAGTTGTTCCACGAATTGGGCATTGAGGAGCGTTTGCAGTGGAAA
AGTCACTCGATGATCTTCAACCAGCTTGAGGAGCCTGGAACATATAGCCGCTTTGACTTTCCTGATCTTCCAGCTCCATT
CAATGGAGTGGCTGCCATTTTAGGTAATAACGATCTGCTCAGCTGGCCAGAGAAGGTTGCCTTCGGCTTGGGTCTCGTAC
CGGCAATGTTGCGAGGCCAGGATTACGTGGAGGAGTGTGATCAATATTCTTGGACTGAATGGCTGAGGATCCACAACATC
CCTGAGCGGGTGAATGAGGAGGTTTTCATCGCCATGAGTAAGGCATTGAACTTTATTGACCCTGATGAGATTTCAGCCAC
TGTCATCCTCACGGCGCTCAATCGATTTCTTCAGGAAAAGAATGGTTCCAAGATGGCCTTCCTTGATGGGGCCCCTCCTG
AGCGGCTTTGTCAACCGATGGTGGAGCATATTCAGTCTCATGGTGGCGAGGTTTATCTCAACAGCCCTTTGCGGGAGATC
AAGCTCAGTGAAGACAGCAGTGTGGAGAGCTTTTTGATCGGAGGTGAGCCGGGTAGTGAATCTAGGCATGTTCAAGCCGA
TGCTTATGTCAGTGCTCTTCCTGTGGATCCGCTCAAATTGCTTTTGCCGGCCCCTTGGAAGCAGATGGAGGTGTTTCGCA
AACTCGACGGATTGCGCGGTGTTCCAGTGATCAACATTCATCTCTGGTTCGACCGCAAGCTCACGGATATCGATCACCTG
CTCTTCAGTCGTTCCCCTCTTTTGAGTGTCTACGCCGATATGAGCATTACCTGCAAGGAGTACGCAGATCCAGATCGCTC
TATGTTGGAACTGGTCTTTGCTCCAGCCAAAGATTGGATCGGCCGTAGCGATGACGACATCATCGAAGCCACATTGGCTG
AGCTCAAGAAGCTTTTCCCGATGCACTTCACAGGCGAAAAACAGGCCAAACTGCGCAAGTACAAGGTCATCAAGACACCT
CTTTCGGTTTATAAGACCACCCCTGGGTGTCAGAAGCTTCGCCCGAGCCAGGAGACTCCGATTGCCAACTTTTTTCTCGC
TGGTGACTTCACAATGCAGCGATACCTGGCGTCGATGGAGGGTGCGGTGCTCAGTGGCAAGTTGTGTGCAAACGCCGTGG
ATAGCTGTGGGGAGAAGTTATCCACGCCCCAGTCTGTTAGCAAGCCTCTCCAGGCCTGA

Upstream 100 bases:

>100_bases
CCGGTCCCGCAATGGGGCCCGCTAGAGCAAGTGAAGGGACTCTAGGAAGAGAATGGGGCAGGGCTCCTTTTAGGGTTGAT
GTTTACTTGTCGTGAGAAGC

Downstream 100 bases:

>100_bases
AGAATGACTCAGATAGCGCCGGATTCGTCGATTATCAGTACTCAGGCTTGCTTGAGTCTTGATGAGGCTTATGAGGCTTG
TCGGAAGGAAACAGCTCAGT

Product: phytoene desaturase

Products: NA

Alternate protein names: Phytoene desaturase [H]

Number of amino acids: Translated: 472; Mature: 472

Protein sequence:

>472_residues
MRVAIAGAGLAGLSCAKYLVDAGHIPVVYESRDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNMLQLFHELGIEERLQWK
SHSMIFNQLEEPGTYSRFDFPDLPAPFNGVAAILGNNDLLSWPEKVAFGLGLVPAMLRGQDYVEECDQYSWTEWLRIHNI
PERVNEEVFIAMSKALNFIDPDEISATVILTALNRFLQEKNGSKMAFLDGAPPERLCQPMVEHIQSHGGEVYLNSPLREI
KLSEDSSVESFLIGGEPGSESRHVQADAYVSALPVDPLKLLLPAPWKQMEVFRKLDGLRGVPVINIHLWFDRKLTDIDHL
LFSRSPLLSVYADMSITCKEYADPDRSMLELVFAPAKDWIGRSDDDIIEATLAELKKLFPMHFTGEKQAKLRKYKVIKTP
LSVYKTTPGCQKLRPSQETPIANFFLAGDFTMQRYLASMEGAVLSGKLCANAVDSCGEKLSTPQSVSKPLQA

Sequences:

>Translated_472_residues
MRVAIAGAGLAGLSCAKYLVDAGHIPVVYESRDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNMLQLFHELGIEERLQWK
SHSMIFNQLEEPGTYSRFDFPDLPAPFNGVAAILGNNDLLSWPEKVAFGLGLVPAMLRGQDYVEECDQYSWTEWLRIHNI
PERVNEEVFIAMSKALNFIDPDEISATVILTALNRFLQEKNGSKMAFLDGAPPERLCQPMVEHIQSHGGEVYLNSPLREI
KLSEDSSVESFLIGGEPGSESRHVQADAYVSALPVDPLKLLLPAPWKQMEVFRKLDGLRGVPVINIHLWFDRKLTDIDHL
LFSRSPLLSVYADMSITCKEYADPDRSMLELVFAPAKDWIGRSDDDIIEATLAELKKLFPMHFTGEKQAKLRKYKVIKTP
LSVYKTTPGCQKLRPSQETPIANFFLAGDFTMQRYLASMEGAVLSGKLCANAVDSCGEKLSTPQSVSKPLQA
>Mature_472_residues
MRVAIAGAGLAGLSCAKYLVDAGHIPVVYESRDVLGGKVAAWKDEDGDWYETGLHIFFGAYPNMLQLFHELGIEERLQWK
SHSMIFNQLEEPGTYSRFDFPDLPAPFNGVAAILGNNDLLSWPEKVAFGLGLVPAMLRGQDYVEECDQYSWTEWLRIHNI
PERVNEEVFIAMSKALNFIDPDEISATVILTALNRFLQEKNGSKMAFLDGAPPERLCQPMVEHIQSHGGEVYLNSPLREI
KLSEDSSVESFLIGGEPGSESRHVQADAYVSALPVDPLKLLLPAPWKQMEVFRKLDGLRGVPVINIHLWFDRKLTDIDHL
LFSRSPLLSVYADMSITCKEYADPDRSMLELVFAPAKDWIGRSDDDIIEATLAELKKLFPMHFTGEKQAKLRKYKVIKTP
LSVYKTTPGCQKLRPSQETPIANFFLAGDFTMQRYLASMEGAVLSGKLCANAVDSCGEKLSTPQSVSKPLQA

Specific function: This enzyme converts phytoene into zeta-carotene via the intermediary of phytofluene by the symmetrical introduction of two double bonds at the C-11 and C-11' positions of phytoene [H]

COG id: COG3349

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the carotenoid/retinoid oxidoreductase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002937
- InterPro:   IPR014102 [H]

Pfam domain/function: PF01593 Amino_oxidase [H]

EC number: 1.3.99.-

Molecular weight: Translated: 52757; Mature: 52757

Theoretical pI: Translated: 5.05; Mature: 5.05

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVAIAGAGLAGLSCAKYLVDAGHIPVVYESRDVLGGKVAAWKDEDGDWYETGLHIFFGA
CEEEEECCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCEEEEECCCCCHHHHCEEEEECC
YPNMLQLFHELGIEERLQWKSHSMIFNQLEEPGTYSRFDFPDLPAPFNGVAAILGNNDLL
CHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCCC
SWPEKVAFGLGLVPAMLRGQDYVEECDQYSWTEWLRIHNIPERVNEEVFIAMSKALNFID
CCHHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHCCCHHHHCHHHEEEHHHHCCCCC
PDEISATVILTALNRFLQEKNGSKMAFLDGAPPERLCQPMVEHIQSHGGEVYLNSPLREI
CCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHCCCEEEECCCHHHE
KLSEDSSVESFLIGGEPGSESRHVQADAYVSALPVDPLKLLLPAPWKQMEVFRKLDGLRG
ECCCCCCCCEEEECCCCCCCCCEEECCHHEEECCCCHHHHHCCCCHHHHHHHHHHCCCCC
VPVINIHLWFDRKLTDIDHLLFSRSPLLSVYADMSITCKEYADPDRSMLELVFAPAKDWI
CCEEEEEEEECCCHHHHHHHHHCCCCHHHHHCCCEEEEHHHCCCHHHHHHHHHHCCHHHC
GRSDDDIIEATLAELKKLFPMHFTGEKQAKLRKYKVIKTPLSVYKTTPGCQKLRPSQETP
CCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCHHHHCCCCCHHHCCCCCCCC
IANFFLAGDFTMQRYLASMEGAVLSGKLCANAVDSCGEKLSTPQSVSKPLQA
CEEEEEECHHHHHHHHHHHCCCCEECHHHHHHHHHHHHHCCCCHHHHCCCCC
>Mature Secondary Structure
MRVAIAGAGLAGLSCAKYLVDAGHIPVVYESRDVLGGKVAAWKDEDGDWYETGLHIFFGA
CEEEEECCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCEEEEECCCCCHHHHCEEEEECC
YPNMLQLFHELGIEERLQWKSHSMIFNQLEEPGTYSRFDFPDLPAPFNGVAAILGNNDLL
CHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCCCCC
SWPEKVAFGLGLVPAMLRGQDYVEECDQYSWTEWLRIHNIPERVNEEVFIAMSKALNFID
CCHHHHHHHHHHHHHHHCCCHHHHHHHCCCHHHHHHHCCCHHHHCHHHEEEHHHHCCCCC
PDEISATVILTALNRFLQEKNGSKMAFLDGAPPERLCQPMVEHIQSHGGEVYLNSPLREI
CCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHCCCEEEECCCHHHE
KLSEDSSVESFLIGGEPGSESRHVQADAYVSALPVDPLKLLLPAPWKQMEVFRKLDGLRG
ECCCCCCCCEEEECCCCCCCCCEEECCHHEEECCCCHHHHHCCCCHHHHHHHHHHCCCCC
VPVINIHLWFDRKLTDIDHLLFSRSPLLSVYADMSITCKEYADPDRSMLELVFAPAKDWI
CCEEEEEEEECCCHHHHHHHHHCCCCHHHHHCCCEEEEHHHCCCHHHHHHHHHHCCHHHC
GRSDDDIIEATLAELKKLFPMHFTGEKQAKLRKYKVIKTPLSVYKTTPGCQKLRPSQETP
CCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCHHHHCCCCCHHHCCCCCCCC
IANFFLAGDFTMQRYLASMEGAVLSGKLCANAVDSCGEKLSTPQSVSKPLQA
CEEEEEECHHHHHHHHHHHCCCCEECHHHHHHHHHHHHHCCCCHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1907510 [H]