| Definition | Prochlorococcus marinus str. MIT 9303, complete genome. |
|---|---|
| Accession | NC_008820 |
| Length | 2,682,675 |
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The map label for this gene is 124024237
Identifier: 124024237
GI number: 124024237
Start: 2241365
End: 2242894
Strand: Reverse
Name: 124024237
Synonym: P9303_25481
Alternate gene names: NA
Gene position: 2242894-2241365 (Counterclockwise)
Preceding gene: 124024238
Following gene: 124024235
Centisome position: 83.61
GC content: 54.51
Gene sequence:
>1530_bases ATGTTGTTCTGGCGGCGCTTTGGGCTGGGAGTAGTGGTCATCCTGGTCTGTGTGGCATTTGCCTTAAAGGCTCTTTTGTT GGTGGATGTCACCAGCTTGTGGAGTGATGAGCTTTACAGCGTTGGTAAGAGTTTTCAGCCGAGTTTCAGGGATCTGTTGG CAATGCTCCGCAATGACACCCATCCGCCTGTTTATTACAGCCTGCTCTGGTTCTGGGGTCAGAGCGTTGGTCAGAACGCT GTGACGTTGCGATTGCTTTCCTGGCTGGCCTATGGGCTTGGTGGAATCGTGATGGTGTTTCAGGCAGGAGCCTTGGCTCA GGCGCGAGGGGTGTCGCGGGGTCGGAGTTTGTGCCTTGCGGCATTGCTGGCTTTTTGCAGTCCGTATCCGGTGCGTTTTG CGATCGAAGGCAAGAGTTATGCCCTTTTGGTGTTGTTTGTGGGACTTGCTTGGTGGTGGCGGCGTCGGCTTTTGCAGTCA GTGGAATCAAGCACTGTTTTTGCAAGAGATCTTCTGTTGTATGGCATCACGGTTTGCCTTGCAGCACTCACCCATTTCTA TGGCCTTTTTTTATTTGCGGTGGCGGCGGCTTGGGATCTATGGCAGCAGCGCTGGCGGCTGGGTGGCATAGCCACACTGG CTTTGCTTCCTGCTTTGGTTTGGATTGCTTACGCGGCTGCTTATCTTTTTCGTGATTCCACGGGTGGCTGGTTGGCTCAG CCAGGTTTCGCTCTGCTTGAGGAGACCTTGGCAAGGGCCCTTGGTCCTTGGCCCTTCCCGAAAATTGGCTTGTTTGTCTT GCTGATGCTGGCTTTGCGACGATGGGGTCGACTGTCTGCTGGTCATGATGATGATGAAGGCCATAGAAGGGATTTACAGC CAGCTGTAGTTGCTGGTTCTCTTGTGGATCAGAGCGGTTTGATTCCATCCGCGTTGATGCTTCTGGCAGTAGTGGCCGTG TCGTTTGTGAAGCCGTTGGCTTTTAGCCGCTACTTCGTGGTGCTGGTGCCGGCGGCTCTGCCTTTGATTGCGGTGAAGTT GGGGGGGCTTCGACTCAACCTCCGAGGTAGTGCCTTAGCGCTTGTCGCTTTGACGGCCCTAACTGTTTTGTGGTGGCAGC AGAGTTATATAGGGCTTCACCCTGGGCTCGGCAGTGCCGGTGGTAGGGAACAAGACAATTTCCGTGCGATTAGCCAATCA CTAGCCGGCCAAGTGGAGCGCTATGGACGGCGGTCGAGGCTACTTAATTTGAGTGATCATATGGAAGTTGCCGCGGGTCG GATGCTTAGCAATTCAATGCCTTGGGGTGATGGTGCTGCGCTGCAGAAACGACTCGATCAACCACCTTTGCCATCGGTTA TCTGGCTTGCGAGTAGTGGTCCTGACCAATCAATGCGTCGTCGGCTCAAGCCTCTGATCAAGAGAGCTGAACAAGGTGGG TATACATGTCGGGAGGATGGCCCACAGATTGAGTACACGCGCGTGTTGCGTTGCACGCTGATGACGTCCAGTGTCGGTGA CTCTCAGTAG
Upstream 100 bases:
>100_bases AGGCTTTGATTGATCAGGGCTGGCGACCCGGTCCGGCTTTGGGGGCCGAATTAAAGCGGCTCAGGCTGGAGCTGATCGAT CAGCAGGTGGCGTTGAGGTG
Downstream 100 bases:
>100_bases CCAACTTCAATTGAATGAGCAGCAACCACTACATCGGCTGAACCTGGCCGATGCGTTGCCAAGGCCCATCCCTGAGAAGT TCTGAGGCGATCTTGGTTGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 509; Mature: 509
Protein sequence:
>509_residues MLFWRRFGLGVVVILVCVAFALKALLLVDVTSLWSDELYSVGKSFQPSFRDLLAMLRNDTHPPVYYSLLWFWGQSVGQNA VTLRLLSWLAYGLGGIVMVFQAGALAQARGVSRGRSLCLAALLAFCSPYPVRFAIEGKSYALLVLFVGLAWWWRRRLLQS VESSTVFARDLLLYGITVCLAALTHFYGLFLFAVAAAWDLWQQRWRLGGIATLALLPALVWIAYAAAYLFRDSTGGWLAQ PGFALLEETLARALGPWPFPKIGLFVLLMLALRRWGRLSAGHDDDEGHRRDLQPAVVAGSLVDQSGLIPSALMLLAVVAV SFVKPLAFSRYFVVLVPAALPLIAVKLGGLRLNLRGSALALVALTALTVLWWQQSYIGLHPGLGSAGGREQDNFRAISQS LAGQVERYGRRSRLLNLSDHMEVAAGRMLSNSMPWGDGAALQKRLDQPPLPSVIWLASSGPDQSMRRRLKPLIKRAEQGG YTCREDGPQIEYTRVLRCTLMTSSVGDSQ
Sequences:
>Translated_509_residues MLFWRRFGLGVVVILVCVAFALKALLLVDVTSLWSDELYSVGKSFQPSFRDLLAMLRNDTHPPVYYSLLWFWGQSVGQNA VTLRLLSWLAYGLGGIVMVFQAGALAQARGVSRGRSLCLAALLAFCSPYPVRFAIEGKSYALLVLFVGLAWWWRRRLLQS VESSTVFARDLLLYGITVCLAALTHFYGLFLFAVAAAWDLWQQRWRLGGIATLALLPALVWIAYAAAYLFRDSTGGWLAQ PGFALLEETLARALGPWPFPKIGLFVLLMLALRRWGRLSAGHDDDEGHRRDLQPAVVAGSLVDQSGLIPSALMLLAVVAV SFVKPLAFSRYFVVLVPAALPLIAVKLGGLRLNLRGSALALVALTALTVLWWQQSYIGLHPGLGSAGGREQDNFRAISQS LAGQVERYGRRSRLLNLSDHMEVAAGRMLSNSMPWGDGAALQKRLDQPPLPSVIWLASSGPDQSMRRRLKPLIKRAEQGG YTCREDGPQIEYTRVLRCTLMTSSVGDSQ >Mature_509_residues MLFWRRFGLGVVVILVCVAFALKALLLVDVTSLWSDELYSVGKSFQPSFRDLLAMLRNDTHPPVYYSLLWFWGQSVGQNA VTLRLLSWLAYGLGGIVMVFQAGALAQARGVSRGRSLCLAALLAFCSPYPVRFAIEGKSYALLVLFVGLAWWWRRRLLQS VESSTVFARDLLLYGITVCLAALTHFYGLFLFAVAAAWDLWQQRWRLGGIATLALLPALVWIAYAAAYLFRDSTGGWLAQ PGFALLEETLARALGPWPFPKIGLFVLLMLALRRWGRLSAGHDDDEGHRRDLQPAVVAGSLVDQSGLIPSALMLLAVVAV SFVKPLAFSRYFVVLVPAALPLIAVKLGGLRLNLRGSALALVALTALTVLWWQQSYIGLHPGLGSAGGREQDNFRAISQS LAGQVERYGRRSRLLNLSDHMEVAAGRMLSNSMPWGDGAALQKRLDQPPLPSVIWLASSGPDQSMRRRLKPLIKRAEQGG YTCREDGPQIEYTRVLRCTLMTSSVGDSQ
Specific function: Unknown
COG id: COG5305
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 56106; Mature: 56106
Theoretical pI: Translated: 10.26; Mature: 10.26
Prosite motif: PS00216 SUGAR_TRANSPORT_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLFWRRFGLGVVVILVCVAFALKALLLVDVTSLWSDELYSVGKSFQPSFRDLLAMLRNDT CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCC HPPVYYSLLWFWGQSVGQNAVTLRLLSWLAYGLGGIVMVFQAGALAQARGVSRGRSLCLA CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH ALLAFCSPYPVRFAIEGKSYALLVLFVGLAWWWRRRLLQSVESSTVFARDLLLYGITVCL HHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AALTHFYGLFLFAVAAAWDLWQQRWRLGGIATLALLPALVWIAYAAAYLFRDSTGGWLAQ HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC PGFALLEETLARALGPWPFPKIGLFVLLMLALRRWGRLSAGHDDDEGHRRDLQPAVVAGS CCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCHHHHHHH LVDQSGLIPSALMLLAVVAVSFVKPLAFSRYFVVLVPAALPLIAVKLGGLRLNLRGSALA HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCHHHH LVALTALTVLWWQQSYIGLHPGLGSAGGREQDNFRAISQSLAGQVERYGRRSRLLNLSDH HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH MEVAAGRMLSNSMPWGDGAALQKRLDQPPLPSVIWLASSGPDQSMRRRLKPLIKRAEQGG HHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCC YTCREDGPQIEYTRVLRCTLMTSSVGDSQ CCCCCCCCCCHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure MLFWRRFGLGVVVILVCVAFALKALLLVDVTSLWSDELYSVGKSFQPSFRDLLAMLRNDT CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCC HPPVYYSLLWFWGQSVGQNAVTLRLLSWLAYGLGGIVMVFQAGALAQARGVSRGRSLCLA CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH ALLAFCSPYPVRFAIEGKSYALLVLFVGLAWWWRRRLLQSVESSTVFARDLLLYGITVCL HHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AALTHFYGLFLFAVAAAWDLWQQRWRLGGIATLALLPALVWIAYAAAYLFRDSTGGWLAQ HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC PGFALLEETLARALGPWPFPKIGLFVLLMLALRRWGRLSAGHDDDEGHRRDLQPAVVAGS CCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCHHHHHHH LVDQSGLIPSALMLLAVVAVSFVKPLAFSRYFVVLVPAALPLIAVKLGGLRLNLRGSALA HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCHHHH LVALTALTVLWWQQSYIGLHPGLGSAGGREQDNFRAISQSLAGQVERYGRRSRLLNLSDH HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH MEVAAGRMLSNSMPWGDGAALQKRLDQPPLPSVIWLASSGPDQSMRRRLKPLIKRAEQGG HHHHHHHHHHCCCCCCCCHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCC YTCREDGPQIEYTRVLRCTLMTSSVGDSQ CCCCCCCCCCHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA