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The map label for this gene is yggS [C]

Identifier: 124023841

GI number: 124023841

Start: 1910796

End: 1911473

Strand: Reverse

Name: yggS [C]

Synonym: P9303_21481

Alternate gene names: 124023841

Gene position: 1911473-1910796 (Counterclockwise)

Preceding gene: 124023842

Following gene: 124023840

Centisome position: 71.25

GC content: 52.95

Gene sequence:

>678_bases
GTGACGTTGTCTGCTCGTTGGCACGATCTGGTTGATCGGCTTGCTGATGGAGTTCATCTTTTGGCTGTGAGTAAGGGGCA
TCCCGCAACCTTGATCCGTCAACTTGCCGAGCTTGGTCAGCAGGATTTTGGCGAGAGTCGCTTGCAGGAGGCTTTGCCCA
AGTTGGAGGACTTGGCTGATCTCAAAGGTCTGCGTTGGCATTTCATTGGACGTCTACAGGCGAACAAGGTGCGGGGAGTG
GTGAGATCCTTTGCCGTGATCCATTCCGTGGATTCTCTGGCTTTGGCAGAACGCATTGCAAGAATTGCTGCTGAAGAGCA
GTGCTGCCCGCAGGTGATGTTGCAGGTCAAATTTCGCGATGATCCCTCTAAGGGTGGGTTCTCTCAAGAGCAGCTCAAGC
AGGCCTGGCCCGATCTGATCCAGTTGTCTCATTTGCAGTTGATTGGTCTGATGACCATGGCTCCTATAGGGCTTTCACTC
GAGCAACGCCAGGAGCTTTTTCGGCAGTGCCGTGAACTTGCCGATCAGCTTGGTTTGCCTGATTGCTCGATGGGAATGAG
CGGTGATTGGCTTGAAGCTATGCATGCAGGGGCTACCTGGTTACGGCTGGGGTCAATTCTCTTTGGCGCGCGTTCAATGG
CTAAGTCTTCTTCCGTAGATGACATTAATGCTGTCTAA

Upstream 100 bases:

>100_bases
CATTACGCCGAACTTCATCTGACCCATTGTCGGCGTGATCGCTCCCCTGAATACGAGAGTTGGCAGCAGTTGTTTGCTCA
GACCTTTATCTGAGGTTGAT

Downstream 100 bases:

>100_bases
ACCCTTGCCCCGGCCTGCTTAGAGCGCTATTTAGGTGTCAGGTTAAGCAGTCTTCCTCTAAGGGGAACTTACCTTCAGTC
GGTTTTAAGCCGATTTACGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 225; Mature: 224

Protein sequence:

>225_residues
MTLSARWHDLVDRLADGVHLLAVSKGHPATLIRQLAELGQQDFGESRLQEALPKLEDLADLKGLRWHFIGRLQANKVRGV
VRSFAVIHSVDSLALAERIARIAAEEQCCPQVMLQVKFRDDPSKGGFSQEQLKQAWPDLIQLSHLQLIGLMTMAPIGLSL
EQRQELFRQCRELADQLGLPDCSMGMSGDWLEAMHAGATWLRLGSILFGARSMAKSSSVDDINAV

Sequences:

>Translated_225_residues
MTLSARWHDLVDRLADGVHLLAVSKGHPATLIRQLAELGQQDFGESRLQEALPKLEDLADLKGLRWHFIGRLQANKVRGV
VRSFAVIHSVDSLALAERIARIAAEEQCCPQVMLQVKFRDDPSKGGFSQEQLKQAWPDLIQLSHLQLIGLMTMAPIGLSL
EQRQELFRQCRELADQLGLPDCSMGMSGDWLEAMHAGATWLRLGSILFGARSMAKSSSVDDINAV
>Mature_224_residues
TLSARWHDLVDRLADGVHLLAVSKGHPATLIRQLAELGQQDFGESRLQEALPKLEDLADLKGLRWHFIGRLQANKVRGVV
RSFAVIHSVDSLALAERIARIAAEEQCCPQVMLQVKFRDDPSKGGFSQEQLKQAWPDLIQLSHLQLIGLMTMAPIGLSLE
QRQELFRQCRELADQLGLPDCSMGMSGDWLEAMHAGATWLRLGSILFGARSMAKSSSVDDINAV

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=227, Percent_Identity=31.7180616740088, Blast_Score=98, Evalue=5e-21,
Organism=Escherichia coli, GI1789321, Length=213, Percent_Identity=35.2112676056338, Blast_Score=111, Evalue=3e-26,
Organism=Caenorhabditis elegans, GI17533025, Length=239, Percent_Identity=32.6359832635983, Blast_Score=88, Evalue=4e-18,
Organism=Saccharomyces cerevisiae, GI6319435, Length=216, Percent_Identity=31.0185185185185, Blast_Score=91, Evalue=2e-19,
Organism=Drosophila melanogaster, GI45550861, Length=216, Percent_Identity=34.7222222222222, Blast_Score=99, Evalue=2e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 24946; Mature: 24815

Theoretical pI: Translated: 6.62; Mature: 6.62

Prosite motif: PS01211 UPF0001

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLSARWHDLVDRLADGVHLLAVSKGHPATLIRQLAELGQQDFGESRLQEALPKLEDLAD
CCCCHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
LKGLRWHFIGRLQANKVRGVVRSFAVIHSVDSLALAERIARIAAEEQCCPQVMLQVKFRD
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
DPSKGGFSQEQLKQAWPDLIQLSHLQLIGLMTMAPIGLSLEQRQELFRQCRELADQLGLP
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCC
DCSMGMSGDWLEAMHAGATWLRLGSILFGARSMAKSSSVDDINAV
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
TLSARWHDLVDRLADGVHLLAVSKGHPATLIRQLAELGQQDFGESRLQEALPKLEDLAD
CCCHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
LKGLRWHFIGRLQANKVRGVVRSFAVIHSVDSLALAERIARIAAEEQCCPQVMLQVKFRD
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
DPSKGGFSQEQLKQAWPDLIQLSHLQLIGLMTMAPIGLSLEQRQELFRQCRELADQLGLP
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCC
DCSMGMSGDWLEAMHAGATWLRLGSILFGARSMAKSSSVDDINAV
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]