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The map label for this gene is deoC [H]

Identifier: 124023835

GI number: 124023835

Start: 1905156

End: 1905839

Strand: Direct

Name: deoC [H]

Synonym: P9303_21421

Alternate gene names: 124023835

Gene position: 1905156-1905839 (Clockwise)

Preceding gene: 124023834

Following gene: 124023836

Centisome position: 71.02

GC content: 59.65

Gene sequence:

>684_bases
ATGCCTGGACCCTCCCAGCAGCGTGAATTACCGGATCTAGCACCACTGATCAATCAGGCACTGCTCGATCCCCACCTTGA
TCAAGAGGTCCTGCAGCAGACCTGTGATGCAGCACGTCACTTCGGCTTTGCAGGTGTATGCACCAACCTCAATCGCCTGC
AGGCGGCGCGCGAACGACTCGGTCCCCCAGGTCCAACGCGGCTGATTGCCGTGATCGCTTTTCCCTTCGGTGCCATACCA
AGCACGCTCAAACAAGCCGAAGCGGAATGGGCCGCCGATCATGGAGCTGAAGAGCTCGATGTGGTTCCAGACTTCTGGGC
CCTAAGCCAAGGCAAAGCAGAACTCTTTGCCGAAGAACTCGCCGAGATCTGTGCACTAGGGCTGCCTGTAAACGTCATCC
TCAACATGGCCCGCCTGCCGGCGGATCGCCTGAGCTTGGCAGTCGACGCCGCCATCGATGCTGACGTCAGCGGGCTGCAA
AGTGGGAATGGTTTCGGCCCAGCAGTAACGGCAGCTGATATTCGTCTGCTGGCAAACCTGGCTCGTGGTCGTTGCGGAAT
CAAAGCTGCCGGGGGGTTACACACTCTCGAGCAAGCCTTCGACATGGTGGAAGCAGGCGCAACCCGTCTTGGTACCAGCC
AAGGCCCAGCTGTCATGCAGGCACTCCGCCGTGGCCAAACGTGA

Upstream 100 bases:

>100_bases
GTTCCGCGAACAAGAAAGTGGCCAATTGCAGGTGATCTACCGACGTAACCATGGCGGCTACGGGGTTATACAGGCTCGAG
ATTAAGCGTGAGCAATCTTG

Downstream 100 bases:

>100_bases
GTGGAGAACGACGCCTCAACGGCCTCTCTTTGAAGGTGGGACCGCTCGGGGAACATGATCGACTTCTCACTCTGCTCAGC
GATCAAGAAGGAGTGACTCG

Product: deoxyribose-phosphate aldolase

Products: NA

Alternate protein names: Phosphodeoxyriboaldolase; DERA; Deoxyriboaldolase [H]

Number of amino acids: Translated: 227; Mature: 226

Protein sequence:

>227_residues
MPGPSQQRELPDLAPLINQALLDPHLDQEVLQQTCDAARHFGFAGVCTNLNRLQAARERLGPPGPTRLIAVIAFPFGAIP
STLKQAEAEWAADHGAEELDVVPDFWALSQGKAELFAEELAEICALGLPVNVILNMARLPADRLSLAVDAAIDADVSGLQ
SGNGFGPAVTAADIRLLANLARGRCGIKAAGGLHTLEQAFDMVEAGATRLGTSQGPAVMQALRRGQT

Sequences:

>Translated_227_residues
MPGPSQQRELPDLAPLINQALLDPHLDQEVLQQTCDAARHFGFAGVCTNLNRLQAARERLGPPGPTRLIAVIAFPFGAIP
STLKQAEAEWAADHGAEELDVVPDFWALSQGKAELFAEELAEICALGLPVNVILNMARLPADRLSLAVDAAIDADVSGLQ
SGNGFGPAVTAADIRLLANLARGRCGIKAAGGLHTLEQAFDMVEAGATRLGTSQGPAVMQALRRGQT
>Mature_226_residues
PGPSQQRELPDLAPLINQALLDPHLDQEVLQQTCDAARHFGFAGVCTNLNRLQAARERLGPPGPTRLIAVIAFPFGAIPS
TLKQAEAEWAADHGAEELDVVPDFWALSQGKAELFAEELAEICALGLPVNVILNMARLPADRLSLAVDAAIDADVSGLQS
GNGFGPAVTAADIRLLANLARGRCGIKAAGGLHTLEQAFDMVEAGATRLGTSQGPAVMQALRRGQT

Specific function: Unknown

COG id: COG0274

COG function: function code F; Deoxyribose-phosphate aldolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the deoC/fbaB aldolase family. DeoC type 1 subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR011343
- InterPro:   IPR002915
- InterPro:   IPR022979 [H]

Pfam domain/function: PF01791 DeoC [H]

EC number: =4.1.2.4 [H]

Molecular weight: Translated: 23870; Mature: 23739

Theoretical pI: Translated: 4.63; Mature: 4.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPGPSQQRELPDLAPLINQALLDPHLDQEVLQQTCDAARHFGFAGVCTNLNRLQAARERL
CCCCCCHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHC
GPPGPTRLIAVIAFPFGAIPSTLKQAEAEWAADHGAEELDVVPDFWALSQGKAELFAEEL
CCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHCCCCCHHHHCCCHHHHHHHHH
AEICALGLPVNVILNMARLPADRLSLAVDAAIDADVSGLQSGNGFGPAVTAADIRLLANL
HHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHCCCCCCCCHHHHHHHHHHHHH
ARGRCGIKAAGGLHTLEQAFDMVEAGATRLGTSQGPAVMQALRRGQT
HHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCC
>Mature Secondary Structure 
PGPSQQRELPDLAPLINQALLDPHLDQEVLQQTCDAARHFGFAGVCTNLNRLQAARERL
CCCCCHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHC
GPPGPTRLIAVIAFPFGAIPSTLKQAEAEWAADHGAEELDVVPDFWALSQGKAELFAEEL
CCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHCCCCCHHHHCCCHHHHHHHHH
AEICALGLPVNVILNMARLPADRLSLAVDAAIDADVSGLQSGNGFGPAVTAADIRLLANL
HHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHCCCCCCCCHHHHHHHHHHHHH
ARGRCGIKAAGGLHTLEQAFDMVEAGATRLGTSQGPAVMQALRRGQT
HHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12240834 [H]