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The map label for this gene is lrtA [H]

Identifier: 124023834

GI number: 124023834

Start: 1904553

End: 1905140

Strand: Direct

Name: lrtA [H]

Synonym: P9303_21411

Alternate gene names: 124023834

Gene position: 1904553-1905140 (Clockwise)

Preceding gene: 124023830

Following gene: 124023835

Centisome position: 70.99

GC content: 54.59

Gene sequence:

>588_bases
ATGAAGCTGCTGATCCATGGACGCAATCTTGAACTAACACCTGCCCTACGCGAATACACACAATCAAAACTGGAGCGGGC
GATTCAACACTTTGAAGACATGGTGAAGGAAGCTGATGTGCACCTTTCAGTCGCTCGAAACCCGAGCGTGCCTCAACAGA
CTGCCGAGGTCACCGTTTTTGCTAACGGCACCGTGATCCGCGCTCAAGAACGCAGTGAAAACCTTTACGCCAGCATTGAT
CTGGTAGCCAGCAAGCTCTGCCGTCAACTACGCCGCTACAAGGAACGCCACAGCGATCACCATCACAGCCCCGGGCATCG
AGCATCGTCAACGCCGACCACCGAAGCGGTAATCGATGAAGCCCCGATCGACGGTTCACTACTCGATGGCAAGGAGGCCC
ACCTCCCCAGCCCAGGCGTTAGGCGCAAATACTTCGCCATGCCGCCAATGAGCGTCGAACAAGCCAGGCATCAACTAGAT
CTGATCGACCATGACTTCTATCTGTTCCGCGAACAAGAAAGTGGCCAATTGCAGGTGATCTACCGACGTAACCATGGCGG
CTACGGGGTTATACAGGCTCGAGATTAA

Upstream 100 bases:

>100_bases
GCACTGGCTCACTGCACTCAAACAGAAAAGTCGATCGGGATTGTGCCGATGTAGAGGTAGTACCTAACTTGCCGATATCA
ATCGGCACCGGAGGGATGCC

Downstream 100 bases:

>100_bases
GCGTGAGCAATCTTGATGCCTGGACCCTCCCAGCAGCGTGAATTACCGGATCTAGCACCACTGATCAATCAGGCACTGCT
CGATCCCCACCTTGATCAAG

Product: light repressed protein A-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 195; Mature: 195

Protein sequence:

>195_residues
MKLLIHGRNLELTPALREYTQSKLERAIQHFEDMVKEADVHLSVARNPSVPQQTAEVTVFANGTVIRAQERSENLYASID
LVASKLCRQLRRYKERHSDHHHSPGHRASSTPTTEAVIDEAPIDGSLLDGKEAHLPSPGVRRKYFAMPPMSVEQARHQLD
LIDHDFYLFREQESGQLQVIYRRNHGGYGVIQARD

Sequences:

>Translated_195_residues
MKLLIHGRNLELTPALREYTQSKLERAIQHFEDMVKEADVHLSVARNPSVPQQTAEVTVFANGTVIRAQERSENLYASID
LVASKLCRQLRRYKERHSDHHHSPGHRASSTPTTEAVIDEAPIDGSLLDGKEAHLPSPGVRRKYFAMPPMSVEQARHQLD
LIDHDFYLFREQESGQLQVIYRRNHGGYGVIQARD
>Mature_195_residues
MKLLIHGRNLELTPALREYTQSKLERAIQHFEDMVKEADVHLSVARNPSVPQQTAEVTVFANGTVIRAQERSENLYASID
LVASKLCRQLRRYKERHSDHHHSPGHRASSTPTTEAVIDEAPIDGSLLDGKEAHLPSPGVRRKYFAMPPMSVEQARHQLD
LIDHDFYLFREQESGQLQVIYRRNHGGYGVIQARD

Specific function: Probably Modulates The Activity Of Sigma(54) (Rpon). [C]

COG id: COG1544

COG function: function code J; Ribosome-associated protein Y (PSrp-1)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein S30Ae family [H]

Homologues:

Organism=Escherichia coli, GI1789595, Length=100, Percent_Identity=35, Blast_Score=60, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003489 [H]

Pfam domain/function: PF02482 Ribosomal_S30AE [H]

EC number: NA

Molecular weight: Translated: 22240; Mature: 22240

Theoretical pI: Translated: 7.47; Mature: 7.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLLIHGRNLELTPALREYTQSKLERAIQHFEDMVKEADVHLSVARNPSVPQQTAEVTVF
CEEEEECCCEEECHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEE
ANGTVIRAQERSENLYASIDLVASKLCRQLRRYKERHSDHHHSPGHRASSTPTTEAVIDE
ECCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHCC
APIDGSLLDGKEAHLPSPGVRRKYFAMPPMSVEQARHQLDLIDHDFYLFREQESGQLQVI
CCCCCCEECCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEE
YRRNHGGYGVIQARD
EEECCCCEEEEEECC
>Mature Secondary Structure
MKLLIHGRNLELTPALREYTQSKLERAIQHFEDMVKEADVHLSVARNPSVPQQTAEVTVF
CEEEEECCCEEECHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEE
ANGTVIRAQERSENLYASIDLVASKLCRQLRRYKERHSDHHHSPGHRASSTPTTEAVIDE
ECCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHCC
APIDGSLLDGKEAHLPSPGVRRKYFAMPPMSVEQARHQLDLIDHDFYLFREQESGQLQVI
CCCCCCEECCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCCEEEE
YRRNHGGYGVIQARD
EEECCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]