| Definition | Prochlorococcus marinus str. MIT 9303, complete genome. |
|---|---|
| Accession | NC_008820 |
| Length | 2,682,675 |
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The map label for this gene is 124023819
Identifier: 124023819
GI number: 124023819
Start: 1887535
End: 1889247
Strand: Direct
Name: 124023819
Synonym: P9303_21261
Alternate gene names: NA
Gene position: 1887535-1889247 (Clockwise)
Preceding gene: 124023818
Following gene: 124023820
Centisome position: 70.36
GC content: 48.04
Gene sequence:
>1713_bases ATGAAACCCATTTCCTTTCCCATCATTGGAGGTGCATTGCTGGGCTCGCTGTCGGTCTTGCTTGCCTCCTGCGATGTCTC CAGCATCACGGGAAATGCGTCAAGCTTCTCAGGGAGGGTTTCCGTATTAGGAAAGCCCGTCAGTGAAGCCAAGGTTTTGC TCTGGCAGTCTTCCGCCAAGGATGGAGCGAAGAAAATCGTTGAGACCAAAACCTCTAAAGATGGGGCGTTCAAATTGTCC ATACCCCGCAATAAGGATAAGGTCACTTATTTAATTTCCGAAGGAGGAAGTATCGATGGGCAAGATGCTGGCAACTTGAA AATGCTCAGTGTTCTTGACTCCAATTCCAACAAGTCTGTCGTCATCAACGAACTGACATCCGTGGGATCAGTGTGGCCCA ATGCTCAACTGATCAACGAAAATAAAATCAGTGGTAGCAAAACAGCTTTAGCCATTGGTTCGGGACATGTAAGCCACCTA GTCAATACAAGCACTGGCAAATATGGCGAAACACTTCTGAATGGCTTAAACCTACCCAACTCCGAGACGATGGTTCGTCT CAACGTTCTTTCCAACCTATTGGCCCTTTGTGGCAATAGCAATACAGCCGATGGCTGTAGTCAGCTTCTCAATCTAACCA ATTCAGATAACAGCCTCAACGCACTGATTTCTATCGCCAAACAGCCGTGGGCAAAAGCCAGTGAGCTCTACAAACTGTTC ACTCAACAATATCCACTCAACAAGGCAGAACAAATTCGAGAAGGCGCAACCCTTCCCTACCTGTTATTTGAACCGGAGAG TTTTTCACTCTCGATCCGTCTAGAGGGTGGCGGCGCAATGGCACTCGGAAAAATGATGTTTGACGACAACGCCAATATGT GGAGTGGTGCCAACTGGATGCCTGGTTCCCAATCTGGTGTCATCAACTCCATTGGAGGAGGGCTCACCAGGTTCAACGCC AGCGGAGAAGCACTCTCCCCATCACCTCAGGGATATAACGGACAAGGGCTGAATGGCGTGGGCTGGGGAACAGGAGTCTC GAAAAATTATGCCTGGGTAGGCACTTTTAACAACAAGATCGGGGTCTTTGATCTTGAAGATGGCAAACCACTTGGCCCCG CGACTGTTGATGGCGAGATCGGCCAACTGCAAGCAGTAACAACCGCCGCGAATGGAGATGTATGGATTGCAGATAACACC AAGGATCACATGATTCGGTTCCCCGATGGTGACTATAAGAATGGCGAGCGATTAACAATCAAAGGATTACAAGCTCCTTT CGGTATTGCTGTTGACCAGCAAAATAGAGTCTGGGTAACCAGCAGCTACAACAATAAACTCACCATCTTCCCTGGAGAAA ACCCTGAGGCAGTGAAAACAATTGATATCGCTTTAGGAGCAAGAGGTGTGGCAATCGATTCCAAAGGCAATGCTTGGGTC GCCCAGCAGACTGATTCAGCAACGCTAGTTTTACCTCCTGGGGTCAGCAAGGCACCTCCACGCCCAACAACAATCATGCA GGAATTCATGCAAGGGCTTGAATATGCAAAAGCAAATCCGCAGCAAACAAGCTCTGGAATGATTGCACTGATCTCACCTG ATTTGAAGATGATTAAATCAGACATTGCAAAAGGAGATGTCTATATCCCCTGGGGCGTAAGCATCGATGGCAATGACAAT GTATGGGTTGCAAATCTTTTTGGTAGCAGTTGA
Upstream 100 bases:
>100_bases AAACGGCACTTTCACAGGTCTATGACGTAACACCGAGAACTGAAGAGCTTGCACTACTTACGTACTACAACTAGAAGAAC CAACAGAACGATCTGAAGCG
Downstream 100 bases:
>100_bases TGCATATCTGTGGAACCAATACATCAAATTGCCCTGAAGGGAAAACGACAGGTGATGTGATTCATGATATCAGAGTGTGT ATTCAAATGAACACCGATGT
Product: NHL repeat-containing protein
Products: NA
Alternate protein names: NHL Repeat Containing Protein; NHL Repeat Protein
Number of amino acids: Translated: 570; Mature: 570
Protein sequence:
>570_residues MKPISFPIIGGALLGSLSVLLASCDVSSITGNASSFSGRVSVLGKPVSEAKVLLWQSSAKDGAKKIVETKTSKDGAFKLS IPRNKDKVTYLISEGGSIDGQDAGNLKMLSVLDSNSNKSVVINELTSVGSVWPNAQLINENKISGSKTALAIGSGHVSHL VNTSTGKYGETLLNGLNLPNSETMVRLNVLSNLLALCGNSNTADGCSQLLNLTNSDNSLNALISIAKQPWAKASELYKLF TQQYPLNKAEQIREGATLPYLLFEPESFSLSIRLEGGGAMALGKMMFDDNANMWSGANWMPGSQSGVINSIGGGLTRFNA SGEALSPSPQGYNGQGLNGVGWGTGVSKNYAWVGTFNNKIGVFDLEDGKPLGPATVDGEIGQLQAVTTAANGDVWIADNT KDHMIRFPDGDYKNGERLTIKGLQAPFGIAVDQQNRVWVTSSYNNKLTIFPGENPEAVKTIDIALGARGVAIDSKGNAWV AQQTDSATLVLPPGVSKAPPRPTTIMQEFMQGLEYAKANPQQTSSGMIALISPDLKMIKSDIAKGDVYIPWGVSIDGNDN VWVANLFGSS
Sequences:
>Translated_570_residues MKPISFPIIGGALLGSLSVLLASCDVSSITGNASSFSGRVSVLGKPVSEAKVLLWQSSAKDGAKKIVETKTSKDGAFKLS IPRNKDKVTYLISEGGSIDGQDAGNLKMLSVLDSNSNKSVVINELTSVGSVWPNAQLINENKISGSKTALAIGSGHVSHL VNTSTGKYGETLLNGLNLPNSETMVRLNVLSNLLALCGNSNTADGCSQLLNLTNSDNSLNALISIAKQPWAKASELYKLF TQQYPLNKAEQIREGATLPYLLFEPESFSLSIRLEGGGAMALGKMMFDDNANMWSGANWMPGSQSGVINSIGGGLTRFNA SGEALSPSPQGYNGQGLNGVGWGTGVSKNYAWVGTFNNKIGVFDLEDGKPLGPATVDGEIGQLQAVTTAANGDVWIADNT KDHMIRFPDGDYKNGERLTIKGLQAPFGIAVDQQNRVWVTSSYNNKLTIFPGENPEAVKTIDIALGARGVAIDSKGNAWV AQQTDSATLVLPPGVSKAPPRPTTIMQEFMQGLEYAKANPQQTSSGMIALISPDLKMIKSDIAKGDVYIPWGVSIDGNDN VWVANLFGSS >Mature_570_residues MKPISFPIIGGALLGSLSVLLASCDVSSITGNASSFSGRVSVLGKPVSEAKVLLWQSSAKDGAKKIVETKTSKDGAFKLS IPRNKDKVTYLISEGGSIDGQDAGNLKMLSVLDSNSNKSVVINELTSVGSVWPNAQLINENKISGSKTALAIGSGHVSHL VNTSTGKYGETLLNGLNLPNSETMVRLNVLSNLLALCGNSNTADGCSQLLNLTNSDNSLNALISIAKQPWAKASELYKLF TQQYPLNKAEQIREGATLPYLLFEPESFSLSIRLEGGGAMALGKMMFDDNANMWSGANWMPGSQSGVINSIGGGLTRFNA SGEALSPSPQGYNGQGLNGVGWGTGVSKNYAWVGTFNNKIGVFDLEDGKPLGPATVDGEIGQLQAVTTAANGDVWIADNT KDHMIRFPDGDYKNGERLTIKGLQAPFGIAVDQQNRVWVTSSYNNKLTIFPGENPEAVKTIDIALGARGVAIDSKGNAWV AQQTDSATLVLPPGVSKAPPRPTTIMQEFMQGLEYAKANPQQTSSGMIALISPDLKMIKSDIAKGDVYIPWGVSIDGNDN VWVANLFGSS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 60225; Mature: 60225
Theoretical pI: Translated: 5.90; Mature: 5.90
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKPISFPIIGGALLGSLSVLLASCDVSSITGNASSFSGRVSVLGKPVSEAKVLLWQSSAK CCCCCCEEEHHHHHHHHHHHHHHCCCHHCCCCCCCCCCEEEEECCCCCCEEEEEEECCCC DGAKKIVETKTSKDGAFKLSIPRNKDKVTYLISEGGSIDGQDAGNLKMLSVLDSNSNKSV HHHHHHHHCCCCCCCEEEEECCCCCCEEEEEEECCCCCCCCCCCCEEEEEEEECCCCCEE VINELTSVGSVWPNAQLINENKISGSKTALAIGSGHVSHLVNTSTGKYGETLLNGLNLPN EEEEHHHHCCCCCCCEEECCCCCCCCCEEEEECCCCHHHEEECCCCCHHHHHHHCCCCCC SETMVRLNVLSNLLALCGNSNTADGCSQLLNLTNSDNSLNALISIAKQPWAKASELYKLF CCCEEEHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHH TQQYPLNKAEQIREGATLPYLLFEPESFSLSIRLEGGGAMALGKMMFDDNANMWSGANWM HHCCCCCHHHHHHCCCCCCEEEECCCCEEEEEEECCCCCEEEEEEEECCCCCCCCCCCCC PGSQSGVINSIGGGLTRFNASGEALSPSPQGYNGQGLNGVGWGTGVSKNYAWVGTFNNKI CCCCCCCHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEE GVFDLEDGKPLGPATVDGEIGQLQAVTTAANGDVWIADNTKDHMIRFPDGDYKNGERLTI EEEECCCCCCCCCCEECCCCCCEEEEEEECCCCEEEECCCCCCEEECCCCCCCCCCEEEE KGLQAPFGIAVDQQNRVWVTSSYNNKLTIFPGENPEAVKTIDIALGARGVAIDSKGNAWV EECCCCCCEEECCCCCEEEEECCCCEEEEECCCCCCCEEEEEEEECCCEEEEECCCCEEE AQQTDSATLVLPPGVSKAPPRPTTIMQEFMQGLEYAKANPQQTSSGMIALISPDLKMIKS EECCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHH DIAKGDVYIPWGVSIDGNDNVWVANLFGSS HHCCCCEEEEEEEEECCCCCEEEEEECCCC >Mature Secondary Structure MKPISFPIIGGALLGSLSVLLASCDVSSITGNASSFSGRVSVLGKPVSEAKVLLWQSSAK CCCCCCEEEHHHHHHHHHHHHHHCCCHHCCCCCCCCCCEEEEECCCCCCEEEEEEECCCC DGAKKIVETKTSKDGAFKLSIPRNKDKVTYLISEGGSIDGQDAGNLKMLSVLDSNSNKSV HHHHHHHHCCCCCCCEEEEECCCCCCEEEEEEECCCCCCCCCCCCEEEEEEEECCCCCEE VINELTSVGSVWPNAQLINENKISGSKTALAIGSGHVSHLVNTSTGKYGETLLNGLNLPN EEEEHHHHCCCCCCCEEECCCCCCCCCEEEEECCCCHHHEEECCCCCHHHHHHHCCCCCC SETMVRLNVLSNLLALCGNSNTADGCSQLLNLTNSDNSLNALISIAKQPWAKASELYKLF CCCEEEHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHH TQQYPLNKAEQIREGATLPYLLFEPESFSLSIRLEGGGAMALGKMMFDDNANMWSGANWM HHCCCCCHHHHHHCCCCCCEEEECCCCEEEEEEECCCCCEEEEEEEECCCCCCCCCCCCC PGSQSGVINSIGGGLTRFNASGEALSPSPQGYNGQGLNGVGWGTGVSKNYAWVGTFNNKI CCCCCCCHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCEE GVFDLEDGKPLGPATVDGEIGQLQAVTTAANGDVWIADNTKDHMIRFPDGDYKNGERLTI EEEECCCCCCCCCCEECCCCCCEEEEEEECCCCEEEECCCCCCEEECCCCCCCCCCEEEE KGLQAPFGIAVDQQNRVWVTSSYNNKLTIFPGENPEAVKTIDIALGARGVAIDSKGNAWV EECCCCCCEEECCCCCEEEEECCCCEEEEECCCCCCCEEEEEEEECCCEEEEECCCCEEE AQQTDSATLVLPPGVSKAPPRPTTIMQEFMQGLEYAKANPQQTSSGMIALISPDLKMIKS EECCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCHHHHHH DIAKGDVYIPWGVSIDGNDNVWVANLFGSS HHCCCCEEEEEEEEECCCCCEEEEEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA