| Definition | Prochlorococcus marinus str. MIT 9303, complete genome. |
|---|---|
| Accession | NC_008820 |
| Length | 2,682,675 |
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The map label for this gene is 124023494
Identifier: 124023494
GI number: 124023494
Start: 1563868
End: 1565082
Strand: Direct
Name: 124023494
Synonym: P9303_17941
Alternate gene names: NA
Gene position: 1563868-1565082 (Clockwise)
Preceding gene: 124023493
Following gene: 124023495
Centisome position: 58.3
GC content: 40.49
Gene sequence:
>1215_bases GTGGCGCTAGAGACTCCTGAAGCCATGGCAAATGAGTCGTCCAATCATTCCGTATCTGAGCAAACTGCAAATGACTACTT CAAAGAAGGTGAAAAAAGATTTCATTTAAAAGATTATCAAGGGGCAATTGATTGTTACAGCAAAGCAATTGAGATCAATC CAAATAATGCCATTGCATACAATAATCGAGGGAATGTAAAAGATGAACTAGGCGATTATCAAAGCGCAATGAATGATTAC AATAAAGCAATTGACATTAACAGTCTGGATGCCAGCTTTTACATCAATAGAGGTGTCGTCAAGAGACACTCAAATAACAT CGAAGGGGCAATCGATGATTACACAAAAGCTATTGAACTAGATCCACAACACGCTACTGCTTATTACAATAGGGGGATTG CTAAAGTCAATCTAAGCGACAACAAAGGGGCTATCTTTGATTATACTAAGGCACTTACCGTAAATCCAAGACATGCTAAA TCATACTACAATAGAGCGATTAGCAAAAACAATATTAATGATATCAAAGGGGCAATTTCTGATTACACAAAAGCAATTGA GGCCATGCCGGTGTTTGCCTCTGCCTATTACAATCGCGGCAATTTAATGGAGAGACTGGGCCGAAGGCAAGCAGCGGTTA CTGACCATGAGAAGGCGCTAGTAATAAAACCACAACTTCTCACTGCGATGAACGAGCGTGGTGAAAATAAAAACTTAGTT GAGAATAAGATTGTAAATGATTTGAACAATGAAGAAGACAGAAGTCAGCTAGATGCATTTAATTATTATAGCCAAGGCAA TGCTGAACAAAAGCGAGGCAACAATCAATCAGCGATCGACTGTTACACCAAGGCGATAGAAGTCAATCCACACTATGCCG AGGCATACAACTACAGGGGCCTAGCTAATTACAACCTTTGTGACTATCAAGCTGCGCTTGATGATTACAACAAGGCAATA GAAATTAACTCGATATATGAAGATGCCTACATTGGTTGCGGTCTTGCAAAGTCTGCATTAAGTGATTACCAAGGTGCAAT TGGAGCCTATGAGAGGGTACTAGTCATTAACCCTAAGAATGTTGCTGCCTATAGAAATCGTGGTATTGCCAAAGAATTGG AGGGAAATCTAGAGGGTGCTTGTTCTGATTGGAGGCAGGCCTCCTCTCTGGGAGATGAAGATGCTGCAGAATGGGTAAAG GCACAATGTTTTTAA
Upstream 100 bases:
>100_bases TCGTGCAAGCACAGAGTTGGCTATGGCCAAGCCAGTCCGCGGAATCATTGAGTTAACATACTGCTAAAAGTTTGGTTATG TCTTGTAGACTCCAACTGAA
Downstream 100 bases:
>100_bases GGGTCCCGCTTCTGCCATCTGTGGAGTCACAAAAAAGAGGCTGGAAAGAGCACATAAATGCTTCTTTCAATTTAATGCTA AAACCGTGCTAATAACATGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 404; Mature: 403
Protein sequence:
>404_residues MALETPEAMANESSNHSVSEQTANDYFKEGEKRFHLKDYQGAIDCYSKAIEINPNNAIAYNNRGNVKDELGDYQSAMNDY NKAIDINSLDASFYINRGVVKRHSNNIEGAIDDYTKAIELDPQHATAYYNRGIAKVNLSDNKGAIFDYTKALTVNPRHAK SYYNRAISKNNINDIKGAISDYTKAIEAMPVFASAYYNRGNLMERLGRRQAAVTDHEKALVIKPQLLTAMNERGENKNLV ENKIVNDLNNEEDRSQLDAFNYYSQGNAEQKRGNNQSAIDCYTKAIEVNPHYAEAYNYRGLANYNLCDYQAALDDYNKAI EINSIYEDAYIGCGLAKSALSDYQGAIGAYERVLVINPKNVAAYRNRGIAKELEGNLEGACSDWRQASSLGDEDAAEWVK AQCF
Sequences:
>Translated_404_residues MALETPEAMANESSNHSVSEQTANDYFKEGEKRFHLKDYQGAIDCYSKAIEINPNNAIAYNNRGNVKDELGDYQSAMNDY NKAIDINSLDASFYINRGVVKRHSNNIEGAIDDYTKAIELDPQHATAYYNRGIAKVNLSDNKGAIFDYTKALTVNPRHAK SYYNRAISKNNINDIKGAISDYTKAIEAMPVFASAYYNRGNLMERLGRRQAAVTDHEKALVIKPQLLTAMNERGENKNLV ENKIVNDLNNEEDRSQLDAFNYYSQGNAEQKRGNNQSAIDCYTKAIEVNPHYAEAYNYRGLANYNLCDYQAALDDYNKAI EINSIYEDAYIGCGLAKSALSDYQGAIGAYERVLVINPKNVAAYRNRGIAKELEGNLEGACSDWRQASSLGDEDAAEWVK AQCF >Mature_403_residues ALETPEAMANESSNHSVSEQTANDYFKEGEKRFHLKDYQGAIDCYSKAIEINPNNAIAYNNRGNVKDELGDYQSAMNDYN KAIDINSLDASFYINRGVVKRHSNNIEGAIDDYTKAIELDPQHATAYYNRGIAKVNLSDNKGAIFDYTKALTVNPRHAKS YYNRAISKNNINDIKGAISDYTKAIEAMPVFASAYYNRGNLMERLGRRQAAVTDHEKALVIKPQLLTAMNERGENKNLVE NKIVNDLNNEEDRSQLDAFNYYSQGNAEQKRGNNQSAIDCYTKAIEVNPHYAEAYNYRGLANYNLCDYQAALDDYNKAIE INSIYEDAYIGCGLAKSALSDYQGAIGAYERVLVINPKNVAAYRNRGIAKELEGNLEGACSDWRQASSLGDEDAAEWVKA QCF
Specific function: Unknown
COG id: COG0457
COG function: function code R; FOG: TPR repeat
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 4 TPR repeats [H]
Homologues:
Organism=Homo sapiens, GI32307148, Length=355, Percent_Identity=28.7323943661972, Blast_Score=119, Evalue=4e-27, Organism=Homo sapiens, GI32307150, Length=355, Percent_Identity=28.7323943661972, Blast_Score=119, Evalue=5e-27, Organism=Homo sapiens, GI310123097, Length=186, Percent_Identity=32.7956989247312, Blast_Score=98, Evalue=2e-20, Organism=Homo sapiens, GI310131789, Length=186, Percent_Identity=32.7956989247312, Blast_Score=97, Evalue=2e-20, Organism=Homo sapiens, GI310110582, Length=186, Percent_Identity=32.7956989247312, Blast_Score=97, Evalue=2e-20, Organism=Homo sapiens, GI170784867, Length=258, Percent_Identity=25.5813953488372, Blast_Score=78, Evalue=2e-14, Organism=Homo sapiens, GI24308141, Length=130, Percent_Identity=35.3846153846154, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI54607135, Length=258, Percent_Identity=24.4186046511628, Blast_Score=67, Evalue=4e-11, Organism=Homo sapiens, GI4506921, Length=112, Percent_Identity=33.9285714285714, Blast_Score=65, Evalue=1e-10, Organism=Caenorhabditis elegans, GI115532692, Length=299, Percent_Identity=28.7625418060201, Blast_Score=111, Evalue=7e-25, Organism=Caenorhabditis elegans, GI115532690, Length=299, Percent_Identity=28.7625418060201, Blast_Score=111, Evalue=7e-25, Organism=Drosophila melanogaster, GI17647755, Length=356, Percent_Identity=28.0898876404494, Blast_Score=103, Evalue=3e-22, Organism=Drosophila melanogaster, GI24585827, Length=356, Percent_Identity=28.0898876404494, Blast_Score=103, Evalue=3e-22, Organism=Drosophila melanogaster, GI24585829, Length=356, Percent_Identity=28.0898876404494, Blast_Score=103, Evalue=3e-22, Organism=Drosophila melanogaster, GI281364285, Length=292, Percent_Identity=22.6027397260274, Blast_Score=70, Evalue=3e-12, Organism=Drosophila melanogaster, GI24581187, Length=292, Percent_Identity=22.6027397260274, Blast_Score=70, Evalue=4e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001440 - InterPro: IPR013026 - InterPro: IPR011990 - InterPro: IPR019734 [H]
Pfam domain/function: PF00515 TPR_1 [H]
EC number: NA
Molecular weight: Translated: 45261; Mature: 45130
Theoretical pI: Translated: 5.01; Mature: 5.01
Prosite motif: PS50005 TPR ; PS50293 TPR_REGION
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALETPEAMANESSNHSVSEQTANDYFKEGEKRFHLKDYQGAIDCYSKAIEINPNNAIAY CCCCCCHHHHCCCCCCCHHHHHHHHHHHCCCCEECCHHHHHHHHHHHCEEEECCCCEEEE NNRGNVKDELGDYQSAMNDYNKAIDINSLDASFYINRGVVKRHSNNIEGAIDDYTKAIEL CCCCCCHHHHHHHHHHHHHHHHEECCCCCCCEEEECCCHHHHCCCCCCCCHHHHHHHEEC DPQHATAYYNRGIAKVNLSDNKGAIFDYTKALTVNPRHAKSYYNRAISKNNINDIKGAIS CCCHHHHHHHCCEEEEEECCCCCCEEEEEEEEECCCHHHHHHHHHHHCCCCHHHHHHHHH DYTKAIEAMPVFASAYYNRGNLMERLGRRQAAVTDHEKALVIKPQLLTAMNERGENKNLV HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHCCCCCCHH ENKIVNDLNNEEDRSQLDAFNYYSQGNAEQKRGNNQSAIDCYTKAIEVNPHYAEAYNYRG HHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHCCCCCCHHHHHHHEEECCCCHHHHHCCCC LANYNLCDYQAALDDYNKAIEINSIYEDAYIGCGLAKSALSDYQGAIGAYERVLVINPKN CCCCCCHHHHHHHHHHHCEEEEEHHHHHHHHCCHHHHHHHHHHHHHHHCCCEEEEECCCC VAAYRNRGIAKELEGNLEGACSDWRQASSLGDEDAAEWVKAQCF HHHHHCCCCHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHCCC >Mature Secondary Structure ALETPEAMANESSNHSVSEQTANDYFKEGEKRFHLKDYQGAIDCYSKAIEINPNNAIAY CCCCCHHHHCCCCCCCHHHHHHHHHHHCCCCEECCHHHHHHHHHHHCEEEECCCCEEEE NNRGNVKDELGDYQSAMNDYNKAIDINSLDASFYINRGVVKRHSNNIEGAIDDYTKAIEL CCCCCCHHHHHHHHHHHHHHHHEECCCCCCCEEEECCCHHHHCCCCCCCCHHHHHHHEEC DPQHATAYYNRGIAKVNLSDNKGAIFDYTKALTVNPRHAKSYYNRAISKNNINDIKGAIS CCCHHHHHHHCCEEEEEECCCCCCEEEEEEEEECCCHHHHHHHHHHHCCCCHHHHHHHHH DYTKAIEAMPVFASAYYNRGNLMERLGRRQAAVTDHEKALVIKPQLLTAMNERGENKNLV HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHCCCCCCHH ENKIVNDLNNEEDRSQLDAFNYYSQGNAEQKRGNNQSAIDCYTKAIEVNPHYAEAYNYRG HHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHCCCCCCHHHHHHHEEECCCCHHHHHCCCC LANYNLCDYQAALDDYNKAIEINSIYEDAYIGCGLAKSALSDYQGAIGAYERVLVINPKN CCCCCCHHHHHHHHHHHCEEEEEHHHHHHHHCCHHHHHHHHHHHHHHHCCCEEEEECCCC VAAYRNRGIAKELEGNLEGACSDWRQASSLGDEDAAEWVKAQCF HHHHHCCCCHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1368342; 8905231 [H]