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The map label for this gene is yjfH [C]

Identifier: 124023282

GI number: 124023282

Start: 1383062

End: 1384672

Strand: Direct

Name: yjfH [C]

Synonym: P9303_15801

Alternate gene names: 124023282

Gene position: 1383062-1384672 (Clockwise)

Preceding gene: 124023281

Following gene: 124023283

Centisome position: 51.56

GC content: 55.0

Gene sequence:

>1611_bases
ATGAGCTCCCGCTTTGATCGCCGTTCAGGAAACCCCCCTCGTGGTGGTCGTCCTAGAGGAGGTCGTCCTGGTGGCATCCG
ACGGGATGGCGATGGGGATTCTTCTGGTCGATCTGCTTACGGAAGCCGCTCTTCCGGCAGCCGCCCATCGGGTGGTCGTT
CCTCTGGACCGCGAGGGGTGTATCGCTCCAGGCCTGATGGAGAATCTGGTGATAGCCCTTCAAAAGTATTCAATGGTGAG
AGCTCTGGGCAGGGCCGTTTCAACCGGGATCGTCCTCGCTCTGAGCAGGGTCGTTTTAGCCGGGATCGTCCTCGCTCTGA
TCAAGGGCGTGCGAGTGAAACTGACAGAAAAGAGGCTCGTCGATTTCGTGATGAGAGACCATCACGACGTCGTAGCGATG
AACGGCTAGGGCGACGTCCCTCCTTGGGAGAACGTTCACGTCCTGCAGACAGGCTGTTGTCTTCAAAAAGATTAGATCCA
TCTACTTCGGATCGCGTTCCAGAGGCGGAAGCATTCGGACCGGCTGCTGCCGATGATCTGCTTTGGGGACGTCATGCCAG
CCAAGCTGCTCTGGAAGCTGGGCGTCCGATTCATCGCATCTGGTGCACATCAGATTTACGAAGCGCACCAAGGTTTTTGC
AATTGCTTCGTGAGGCCAAATCCTCAGGAGTACTTGTTGAAGAGGTCACCTGGGCTCGTCTCGGTCAACTCACAGGTGGT
GCTGTGCATCAAGGAATTGTTCTGCAGACTGCTGCAGCGGAGACCCTTGATTTGCAAAGTCTGATCGAGGGATGTGCGGG
TCTTGGGGAATCGCCCCTTTTGCTTGCCCTCGATGGCCTAACGGATCCCCACAATCTCGGCGCCATTATTCGTTCTGCAG
AGGCTCTGGGCGCCCATGGGGTTGTTCTCCCACAACGACGAAGTGCTGGTCTCACTGGTTCGGTGGCCAAGGTTGCAGCA
GGCGCTTTGGAGCATCTACCAGTAGCGCGTGTCGTGAATCTCAATCGCTCTCTAGAAGCACTGAAGCAGGCGGGATATCG
AGTTATTGGCCTGGCGGAGGAAGGGGACATCACCCTTCCAGATGTCGATCTAGACGGACCTTTAGTGATCGTGACGGGAT
CAGAGAAGCAAGGGATCTCTCTCCTGACTCGTCGCCATTGTGATCAGCTTGTACGCGTTCCATTACGAGGGGTTACTCCC
AGTCTGAATGCCTCTGTTGCTACTGCGATGTGTTTATACGAGGTTGCTCGTCGTGGCTGGATGAAGGGGGTTCATGGCCA
AACTCCATCACCCAGGATCGTGCGGCCTCAATGCCCTTTGCCGGTCATCTCTTGCGACTCCATTTCCGTGGAGTCAGAAC
CCATTGCCAAGACCAATCATTCGCCAATCCATCAGCCGGATGAGATTGAGCGGTTTGGTGAGGCTTTGCCGTCCAGCTTG
GCTAACCATCAACTTTGTTCCAAAGATGATGAGCCACCGATGGATCGCCAAATAGGGGATTTGCAGGCAGAAAGAACTTC
GATTGAGGATGAGGATTTGCTGACCAGTCAGCATTGCAATTTTGACGTTCGTGAGGATCAGTCACCTGATGAAGAGAGTG
TTCAGGGTTGA

Upstream 100 bases:

>100_bases
TGGTTGGCTGGCTCTTTTTGCAGAATCCGGCGCGGCTTGCGCAGCTCTTGGATCAACTGGAGGAGACCGAACACGACTTG
CTATAGCTTCTTCACTTCTT

Downstream 100 bases:

>100_bases
TCCAAAAGTTCCTTGGCCGCCGACAGCGAAACACCAATTGGAACATGACGAGGCAAAATAATGCTCATCCGCCAACCTCA
ATCATGGTCTCATTGATTAG

Product: rRNA methylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 536; Mature: 535

Protein sequence:

>536_residues
MSSRFDRRSGNPPRGGRPRGGRPGGIRRDGDGDSSGRSAYGSRSSGSRPSGGRSSGPRGVYRSRPDGESGDSPSKVFNGE
SSGQGRFNRDRPRSEQGRFSRDRPRSDQGRASETDRKEARRFRDERPSRRRSDERLGRRPSLGERSRPADRLLSSKRLDP
STSDRVPEAEAFGPAAADDLLWGRHASQAALEAGRPIHRIWCTSDLRSAPRFLQLLREAKSSGVLVEEVTWARLGQLTGG
AVHQGIVLQTAAAETLDLQSLIEGCAGLGESPLLLALDGLTDPHNLGAIIRSAEALGAHGVVLPQRRSAGLTGSVAKVAA
GALEHLPVARVVNLNRSLEALKQAGYRVIGLAEEGDITLPDVDLDGPLVIVTGSEKQGISLLTRRHCDQLVRVPLRGVTP
SLNASVATAMCLYEVARRGWMKGVHGQTPSPRIVRPQCPLPVISCDSISVESEPIAKTNHSPIHQPDEIERFGEALPSSL
ANHQLCSKDDEPPMDRQIGDLQAERTSIEDEDLLTSQHCNFDVREDQSPDEESVQG

Sequences:

>Translated_536_residues
MSSRFDRRSGNPPRGGRPRGGRPGGIRRDGDGDSSGRSAYGSRSSGSRPSGGRSSGPRGVYRSRPDGESGDSPSKVFNGE
SSGQGRFNRDRPRSEQGRFSRDRPRSDQGRASETDRKEARRFRDERPSRRRSDERLGRRPSLGERSRPADRLLSSKRLDP
STSDRVPEAEAFGPAAADDLLWGRHASQAALEAGRPIHRIWCTSDLRSAPRFLQLLREAKSSGVLVEEVTWARLGQLTGG
AVHQGIVLQTAAAETLDLQSLIEGCAGLGESPLLLALDGLTDPHNLGAIIRSAEALGAHGVVLPQRRSAGLTGSVAKVAA
GALEHLPVARVVNLNRSLEALKQAGYRVIGLAEEGDITLPDVDLDGPLVIVTGSEKQGISLLTRRHCDQLVRVPLRGVTP
SLNASVATAMCLYEVARRGWMKGVHGQTPSPRIVRPQCPLPVISCDSISVESEPIAKTNHSPIHQPDEIERFGEALPSSL
ANHQLCSKDDEPPMDRQIGDLQAERTSIEDEDLLTSQHCNFDVREDQSPDEESVQG
>Mature_535_residues
SSRFDRRSGNPPRGGRPRGGRPGGIRRDGDGDSSGRSAYGSRSSGSRPSGGRSSGPRGVYRSRPDGESGDSPSKVFNGES
SGQGRFNRDRPRSEQGRFSRDRPRSDQGRASETDRKEARRFRDERPSRRRSDERLGRRPSLGERSRPADRLLSSKRLDPS
TSDRVPEAEAFGPAAADDLLWGRHASQAALEAGRPIHRIWCTSDLRSAPRFLQLLREAKSSGVLVEEVTWARLGQLTGGA
VHQGIVLQTAAAETLDLQSLIEGCAGLGESPLLLALDGLTDPHNLGAIIRSAEALGAHGVVLPQRRSAGLTGSVAKVAAG
ALEHLPVARVVNLNRSLEALKQAGYRVIGLAEEGDITLPDVDLDGPLVIVTGSEKQGISLLTRRHCDQLVRVPLRGVTPS
LNASVATAMCLYEVARRGWMKGVHGQTPSPRIVRPQCPLPVISCDSISVESEPIAKTNHSPIHQPDEIERFGEALPSSLA
NHQLCSKDDEPPMDRQIGDLQAERTSIEDEDLLTSQHCNFDVREDQSPDEESVQG

Specific function: Unknown

COG id: COG0566

COG function: function code J; rRNA methylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

Organism=Homo sapiens, GI40068479, Length=277, Percent_Identity=28.158844765343, Blast_Score=80, Evalue=5e-15,
Organism=Escherichia coli, GI1790623, Length=241, Percent_Identity=40.2489626556017, Blast_Score=171, Evalue=1e-43,
Organism=Escherichia coli, GI1788935, Length=314, Percent_Identity=27.3885350318471, Blast_Score=90, Evalue=4e-19,
Organism=Escherichia coli, GI1790083, Length=149, Percent_Identity=31.5436241610738, Blast_Score=70, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17555908, Length=319, Percent_Identity=27.2727272727273, Blast_Score=82, Evalue=9e-16,
Organism=Saccharomyces cerevisiae, GI6324775, Length=256, Percent_Identity=31.640625, Blast_Score=96, Evalue=1e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004441
- InterPro:   IPR001537
- InterPro:   IPR013123 [H]

Pfam domain/function: PF00588 SpoU_methylase; PF08032 SpoU_sub_bind [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 57987; Mature: 57856

Theoretical pI: Translated: 8.24; Mature: 8.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSRFDRRSGNPPRGGRPRGGRPGGIRRDGDGDSSGRSAYGSRSSGSRPSGGRSSGPRGV
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
YRSRPDGESGDSPSKVFNGESSGQGRFNRDRPRSEQGRFSRDRPRSDQGRASETDRKEAR
CCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCHHHHHHH
RFRDERPSRRRSDERLGRRPSLGERSRPADRLLSSKRLDPSTSDRVPEAEAFGPAAADDL
HHHHCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCHHHCCCCHHHHH
LWGRHASQAALEAGRPIHRIWCTSDLRSAPRFLQLLREAKSSGVLVEEVTWARLGQLTGG
HHCCCHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHHHCCEEHHHHHHHHHHHHCCC
AVHQGIVLQTAAAETLDLQSLIEGCAGLGESPLLLALDGLTDPHNLGAIIRSAEALGAHG
HHHCCEEEEHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCC
VVLPQRRSAGLTGSVAKVAAGALEHLPVARVVNLNRSLEALKQAGYRVIGLAEEGDITLP
EEECCCCCCCCCCHHHHHHHHHHHHCCHHHHHHCHHHHHHHHHCCCEEEEECCCCCEECC
DVDLDGPLVIVTGSEKQGISLLTRRHCDQLVRVPLRGVTPSLNASVATAMCLYEVARRGW
CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
MKGVHGQTPSPRIVRPQCPLPVISCDSISVESEPIAKTNHSPIHQPDEIERFGEALPSSL
HCCCCCCCCCCCEECCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
ANHQLCSKDDEPPMDRQIGDLQAERTSIEDEDLLTSQHCNFDVREDQSPDEESVQG
HHCHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCHHHCCC
>Mature Secondary Structure 
SSRFDRRSGNPPRGGRPRGGRPGGIRRDGDGDSSGRSAYGSRSSGSRPSGGRSSGPRGV
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
YRSRPDGESGDSPSKVFNGESSGQGRFNRDRPRSEQGRFSRDRPRSDQGRASETDRKEAR
CCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCHHHHHHH
RFRDERPSRRRSDERLGRRPSLGERSRPADRLLSSKRLDPSTSDRVPEAEAFGPAAADDL
HHHHCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCHHHCCCCHHHHH
LWGRHASQAALEAGRPIHRIWCTSDLRSAPRFLQLLREAKSSGVLVEEVTWARLGQLTGG
HHCCCHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHHHCCEEHHHHHHHHHHHHCCC
AVHQGIVLQTAAAETLDLQSLIEGCAGLGESPLLLALDGLTDPHNLGAIIRSAEALGAHG
HHHCCEEEEHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCC
VVLPQRRSAGLTGSVAKVAAGALEHLPVARVVNLNRSLEALKQAGYRVIGLAEEGDITLP
EEECCCCCCCCCCHHHHHHHHHHHHCCHHHHHHCHHHHHHHHHCCCEEEEECCCCCEECC
DVDLDGPLVIVTGSEKQGISLLTRRHCDQLVRVPLRGVTPSLNASVATAMCLYEVARRGW
CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
MKGVHGQTPSPRIVRPQCPLPVISCDSISVESEPIAKTNHSPIHQPDEIERFGEALPSSL
HCCCCCCCCCCCEECCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
ANHQLCSKDDEPPMDRQIGDLQAERTSIEDEDLLTSQHCNFDVREDQSPDEESVQG
HHCHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]