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The map label for this gene is ycjO [C]

Identifier: 124023231

GI number: 124023231

Start: 1332810

End: 1333676

Strand: Direct

Name: ycjO [C]

Synonym: P9303_15291

Alternate gene names: 124023231

Gene position: 1332810-1333676 (Clockwise)

Preceding gene: 124023230

Following gene: 124023232

Centisome position: 49.68

GC content: 48.21

Gene sequence:

>867_bases
ATGATCCAATTGCTTCTATTCCCGGCAGCTCTATTAATTGCCTTCGTCTTTGGTATCCCTCTACTTCGTTATTCCTGGTT
GAGCTTCCATGCTGATTCAGTCCTCACAGGCTTAGTTGCGATTCCCAATCATGGTGCGAATTGGCTTCGTCTACTGCACG
ACGAACGCTTCTGGCAAGACACCTATCAGACAGCCCGCTTCGCAACCGTTTCAGTCAGCCTAGAACTATTACTTGCTATA
GCGATAGCCCTCTTACTCGATCAGCGTTGGCGTGGTCGAGGTGTTGTAAGGGCCATAAGTTTGCTCCCATGGGCACTGCC
AACTACTGTAATGGCTCTTGGCTGGCGTTGGATCTTTAATACACCTTACGGCCCTATTGAACAATTCGCAGAACTGATTG
GACTACAACCTCTAAACATCCTTTCGAATCCAAATATCACCTGGCTTGCCACGGTTGTTGGTGATGTTTGGAAGACCACG
CCATTTGCGGCTCTGATTCTTTTGGCTGGCTTGCAAACCATTCCCAATGATCTCTACGAAGCCTTCTATCTCGAAGGTGG
CCATCCACGAGCCGCACTATTTCAGATCACCTTGCCGCTCTTGCAGCCTTATTTACTCCTTAGTCTTTTATTTCGCCTTG
CGCAGGCCTTCGGCGTTTTCGACTTGATTCAGGTGATGACTGGTGGGGGTCCGGCAGGAAGCACGGAAAGCCTTGCTTTA
TATGCTTATTTAAACGCAATGCGATTCCTCGATTTTGGCTATAGCGCCACGGTAATGATCAGCGGGTTTCTTCTACTTGT
TATTGCCTGTCTGCTTGTTTTTCTAATCATCAAACAGGCCAGCCATTGGCGAGAGGCAATGAAATGA

Upstream 100 bases:

>100_bases
ATCTGAGTTCAATTTTTACAGGCCAATCCACCGTTAGCGATGCAATGTCCAACGCCCAAGCAAACACCAAGAAGATTCTT
ATGGCGGCAAGAGAAACTAA

Downstream 100 bases:

>100_bases
TTCGTCAGCGAAATCTTTGGATCACTGTTCTCCTGCTTTGGTCTTTAGCGCCTCTGCTTTGGCAGCTCTATACATCTTTT
TGCACCCATGAAGCTCTTCT

Product: sugar ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 288; Mature: 288

Protein sequence:

>288_residues
MIQLLLFPAALLIAFVFGIPLLRYSWLSFHADSVLTGLVAIPNHGANWLRLLHDERFWQDTYQTARFATVSVSLELLLAI
AIALLLDQRWRGRGVVRAISLLPWALPTTVMALGWRWIFNTPYGPIEQFAELIGLQPLNILSNPNITWLATVVGDVWKTT
PFAALILLAGLQTIPNDLYEAFYLEGGHPRAALFQITLPLLQPYLLLSLLFRLAQAFGVFDLIQVMTGGGPAGSTESLAL
YAYLNAMRFLDFGYSATVMISGFLLLVIACLLVFLIIKQASHWREAMK

Sequences:

>Translated_288_residues
MIQLLLFPAALLIAFVFGIPLLRYSWLSFHADSVLTGLVAIPNHGANWLRLLHDERFWQDTYQTARFATVSVSLELLLAI
AIALLLDQRWRGRGVVRAISLLPWALPTTVMALGWRWIFNTPYGPIEQFAELIGLQPLNILSNPNITWLATVVGDVWKTT
PFAALILLAGLQTIPNDLYEAFYLEGGHPRAALFQITLPLLQPYLLLSLLFRLAQAFGVFDLIQVMTGGGPAGSTESLAL
YAYLNAMRFLDFGYSATVMISGFLLLVIACLLVFLIIKQASHWREAMK
>Mature_288_residues
MIQLLLFPAALLIAFVFGIPLLRYSWLSFHADSVLTGLVAIPNHGANWLRLLHDERFWQDTYQTARFATVSVSLELLLAI
AIALLLDQRWRGRGVVRAISLLPWALPTTVMALGWRWIFNTPYGPIEQFAELIGLQPLNILSNPNITWLATVVGDVWKTT
PFAALILLAGLQTIPNDLYEAFYLEGGHPRAALFQITLPLLQPYLLLSLLFRLAQAFGVFDLIQVMTGGGPAGSTESLAL
YAYLNAMRFLDFGYSATVMISGFLLLVIACLLVFLIIKQASHWREAMK

Specific function: Probably part of an ABC transporter complex. Probably responsible for the translocation of the substrate across the membrane (Probable) [H]

COG id: COG1175

COG function: function code G; ABC-type sugar transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787570, Length=231, Percent_Identity=26.4069264069264, Blast_Score=94, Evalue=8e-21,
Organism=Escherichia coli, GI1790465, Length=216, Percent_Identity=31.4814814814815, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1789861, Length=239, Percent_Identity=28.4518828451883, Blast_Score=88, Evalue=5e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 32145; Mature: 32145

Theoretical pI: Translated: 7.71; Mature: 7.71

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIQLLLFPAALLIAFVFGIPLLRYSWLSFHADSVLTGLVAIPNHGANWLRLLHDERFWQD
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
TYQTARFATVSVSLELLLAIAIALLLDQRWRGRGVVRAISLLPWALPTTVMALGWRWIFN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEC
TPYGPIEQFAELIGLQPLNILSNPNITWLATVVGDVWKTTPFAALILLAGLQTIPNDLYE
CCCCHHHHHHHHHCCCCHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
AFYLEGGHPRAALFQITLPLLQPYLLLSLLFRLAQAFGVFDLIQVMTGGGPAGSTESLAL
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
YAYLNAMRFLDFGYSATVMISGFLLLVIACLLVFLIIKQASHWREAMK
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MIQLLLFPAALLIAFVFGIPLLRYSWLSFHADSVLTGLVAIPNHGANWLRLLHDERFWQD
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
TYQTARFATVSVSLELLLAIAIALLLDQRWRGRGVVRAISLLPWALPTTVMALGWRWIFN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHEEC
TPYGPIEQFAELIGLQPLNILSNPNITWLATVVGDVWKTTPFAALILLAGLQTIPNDLYE
CCCCHHHHHHHHHCCCCHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH
AFYLEGGHPRAALFQITLPLLQPYLLLSLLFRLAQAFGVFDLIQVMTGGGPAGSTESLAL
HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
YAYLNAMRFLDFGYSATVMISGFLLLVIACLLVFLIIKQASHWREAMK
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA