| Definition | Prochlorococcus marinus str. MIT 9303, complete genome. |
|---|---|
| Accession | NC_008820 |
| Length | 2,682,675 |
Click here to switch to the map view.
The map label for this gene is 124023020
Identifier: 124023020
GI number: 124023020
Start: 1118763
End: 1120433
Strand: Direct
Name: 124023020
Synonym: P9303_13151
Alternate gene names: NA
Gene position: 1118763-1120433 (Clockwise)
Preceding gene: 124023017
Following gene: 124023021
Centisome position: 41.7
GC content: 47.46
Gene sequence:
>1671_bases GTGACCACGACCAAGCAAAACCAACCCGCTTTGATTCAGGCATTAATGAAGCCAGTGGCTTATCCACATCCGGTGAAGGT TGTGGAGCTTGTCGAAACCCACATTTCCTGGGTGCTTCTGACCGGTTCCTATGTCTACAAGCTCAAAAAAGCTGTGCATT TTGACTTTGTAGACGCCACCACGCTGAAGCAACGCCTTCATTTTTGCCAAGAGGAGCTGCGCCTAAATCGTCGCTTGGCT CCAGACCTTTATCTAGGTGTGACCAGGATTCTCGAATCAGTTGATGGCGCCAAAGTTCTCGATGAAAACTTTGAATCGAA TGATCCATCCACAAAGGGTGTGGTTGATGTTGCTGTGAAGATGCGTCAGTTCCCTGTCTCTCGTCTTCTCAGTGTTTATC TGAGTGATGGGGTTTTGAAGACTGAATCCCTAAAAAGACTTGCTTTCGAACTTGCAGAGTTTCATCTCAGTGTCAAAACG GCTGTTGCAGATGGAAATTTTGGTGGATTTGATGCGGTAATCAATCCTGTTCATGCCAATTTGCGTGTATTGGATCAATT GACACTTCCTGAGCCATTAGAGCTTTGGCTTGAGCAGCATCGAGCTTGGATTAAGAGTATTGAGCCAGAACTGGCTTTTC GTTTTAAACAACGACTCAACGCAGGAGCCATACGCGAATGCCATGGCGATCTTCATGTCGGCAATATTTATCTAAACAAT GATGACCGCCTGGAAGTCTTCGATGCCATTGATTTTAATCCAAGTCTTCGTTGGATCGATCCGATTAGTGAAATGGCATT TCTAGTGATGGATTTTGAGGTACACGATCATCAGGGTGATGCCATGGTGATACTCAACGAATGGCTTGAGCAGACAGGCG ATTACAAGGCTCTTGACCTTTGGCCTTGGTATTCGGCTTACAGAGCGCTTGTGCGCGCCAAGGTGAGTGGCCTGCAATGG CAACAACTCACCTCCCAGAGTCAAAATGACTCTGTTGATCAGCAACACCTTCAACGGCTGCTTAAGGATCTCAACCTCTA CATTCAGCGGGCAAGAGAGGTCCAGCAAACAAAATCAGCCGGTATTGTGCTGATGCATGGACTGAGCGGTAGCGGCAAGT CTTATATAAGTGAGCAGCTCTATCAGCAGTTGCCAGCAGTACGCTTGCGTTCAGATGTCGAACGTGAGCGTGCTTTCGGT CGCCGACCATTACACAAGCTGCTTGGCTTTGAGAAAGGATCGATGACAAGTGGTGGCATTACACCAATTTTTCAAGGAGA CCCTTATCGACCTGAGGTTACCAGTTGGTTGTTTGATCAATGCCTACCGGCATTGACTCAAAGTTGCTTGAGCAGTGGTT ACACCACAATTGTTGATGCCACCTTCTTACGTGAACGAGAACGACAGCGAATGTTTGTATTGGCGCGTCAACAAGGATGC CCGATTGCCATCGTGGCCTGTGAATGTAGCGATTTAACAGCTCAGGAGCGCATCGCTACAAGGATGGGGATTGGAACTGA CCCCTCTGAGGCAGATTTAAGCGTGCGTGAACTGCAGAAAGCGTGGATTGAACCTCTAACAACCTTTGAGCAAGAGTTGA CGGTTAGGTTTACGGAAAAAACTCCAATCAGCATTGGCCTAGAACGTTTGCGTGTTTTGCTGAATCCTTAG
Upstream 100 bases:
>100_bases GCTCCTAGCCAACATTATTGAACAGAACCATGTTGGCTTTATAGATGGCGGAGAGTAGTCACAGATGCCAGTGTTGAGTC ATAGCTGAAACACTCCGCGG
Downstream 100 bases:
>100_bases TGCATCTGATAAACTTGGCTTTTGCAATAGAGTATGACTTTGGTTCTCTTGTGGGGACAAACGGTGAAGAATCTTTGGCT ATAGATTTCTGCTTTTGTAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 556; Mature: 555
Protein sequence:
>556_residues MTTTKQNQPALIQALMKPVAYPHPVKVVELVETHISWVLLTGSYVYKLKKAVHFDFVDATTLKQRLHFCQEELRLNRRLA PDLYLGVTRILESVDGAKVLDENFESNDPSTKGVVDVAVKMRQFPVSRLLSVYLSDGVLKTESLKRLAFELAEFHLSVKT AVADGNFGGFDAVINPVHANLRVLDQLTLPEPLELWLEQHRAWIKSIEPELAFRFKQRLNAGAIRECHGDLHVGNIYLNN DDRLEVFDAIDFNPSLRWIDPISEMAFLVMDFEVHDHQGDAMVILNEWLEQTGDYKALDLWPWYSAYRALVRAKVSGLQW QQLTSQSQNDSVDQQHLQRLLKDLNLYIQRAREVQQTKSAGIVLMHGLSGSGKSYISEQLYQQLPAVRLRSDVERERAFG RRPLHKLLGFEKGSMTSGGITPIFQGDPYRPEVTSWLFDQCLPALTQSCLSSGYTTIVDATFLRERERQRMFVLARQQGC PIAIVACECSDLTAQERIATRMGIGTDPSEADLSVRELQKAWIEPLTTFEQELTVRFTEKTPISIGLERLRVLLNP
Sequences:
>Translated_556_residues MTTTKQNQPALIQALMKPVAYPHPVKVVELVETHISWVLLTGSYVYKLKKAVHFDFVDATTLKQRLHFCQEELRLNRRLA PDLYLGVTRILESVDGAKVLDENFESNDPSTKGVVDVAVKMRQFPVSRLLSVYLSDGVLKTESLKRLAFELAEFHLSVKT AVADGNFGGFDAVINPVHANLRVLDQLTLPEPLELWLEQHRAWIKSIEPELAFRFKQRLNAGAIRECHGDLHVGNIYLNN DDRLEVFDAIDFNPSLRWIDPISEMAFLVMDFEVHDHQGDAMVILNEWLEQTGDYKALDLWPWYSAYRALVRAKVSGLQW QQLTSQSQNDSVDQQHLQRLLKDLNLYIQRAREVQQTKSAGIVLMHGLSGSGKSYISEQLYQQLPAVRLRSDVERERAFG RRPLHKLLGFEKGSMTSGGITPIFQGDPYRPEVTSWLFDQCLPALTQSCLSSGYTTIVDATFLRERERQRMFVLARQQGC PIAIVACECSDLTAQERIATRMGIGTDPSEADLSVRELQKAWIEPLTTFEQELTVRFTEKTPISIGLERLRVLLNP >Mature_555_residues TTTKQNQPALIQALMKPVAYPHPVKVVELVETHISWVLLTGSYVYKLKKAVHFDFVDATTLKQRLHFCQEELRLNRRLAP DLYLGVTRILESVDGAKVLDENFESNDPSTKGVVDVAVKMRQFPVSRLLSVYLSDGVLKTESLKRLAFELAEFHLSVKTA VADGNFGGFDAVINPVHANLRVLDQLTLPEPLELWLEQHRAWIKSIEPELAFRFKQRLNAGAIRECHGDLHVGNIYLNND DRLEVFDAIDFNPSLRWIDPISEMAFLVMDFEVHDHQGDAMVILNEWLEQTGDYKALDLWPWYSAYRALVRAKVSGLQWQ QLTSQSQNDSVDQQHLQRLLKDLNLYIQRAREVQQTKSAGIVLMHGLSGSGKSYISEQLYQQLPAVRLRSDVERERAFGR RPLHKLLGFEKGSMTSGGITPIFQGDPYRPEVTSWLFDQCLPALTQSCLSSGYTTIVDATFLRERERQRMFVLARQQGCP IAIVACECSDLTAQERIATRMGIGTDPSEADLSVRELQKAWIEPLTTFEQELTVRFTEKTPISIGLERLRVLLNP
Specific function: Some isolated peptides of this protein are able to bind to human U937 monocytoblastic and A549 epithelial cell lines [H]
COG id: COG2187
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Secreted, cell wall [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011009 - InterPro: IPR010488 [H]
Pfam domain/function: PF06414 Zeta_toxin [H]
EC number: NA
Molecular weight: Translated: 63303; Mature: 63172
Theoretical pI: Translated: 6.40; Mature: 6.40
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTTKQNQPALIQALMKPVAYPHPVKVVELVETHISWVLLTGSYVYKLKKAVHFDFVDAT CCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHEEEEECHHHHHHHHHHHHCCCCHH TLKQRLHFCQEELRLNRRLAPDLYLGVTRILESVDGAKVLDENFESNDPSTKGVVDVAVK HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCHHHHHHH MRQFPVSRLLSVYLSDGVLKTESLKRLAFELAEFHLSVKTAVADGNFGGFDAVINPVHAN HHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHEEEECCCCCCHHHHHHHHHHH LRVLDQLTLPEPLELWLEQHRAWIKSIEPELAFRFKQRLNAGAIRECHGDLHVGNIYLNN HHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHCCCEEEEEEEECC DDRLEVFDAIDFNPSLRWIDPISEMAFLVMDFEVHDHQGDAMVILNEWLEQTGDYKALDL CCCEEEEEEECCCCCCCEECCHHHHHHHHEEEEEECCCCCEEEEHHHHHHHCCCEEEEEC WPWYSAYRALVRAKVSGLQWQQLTSQSQNDSVDQQHLQRLLKDLNLYIQRAREVQQTKSA CHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC GIVLMHGLSGSGKSYISEQLYQQLPAVRLRSDVERERAFGRRPLHKLLGFEKGSMTSGGI CEEEEECCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCC TPIFQGDPYRPEVTSWLFDQCLPALTQSCLSSGYTTIVDATFLRERERQRMFVLARQQGC CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHEECCCCC PIAIVACECSDLTAQERIATRMGIGTDPSEADLSVRELQKAWIEPLTTFEQELTVRFTEK CEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHEEEECCC TPISIGLERLRVLLNP CCHHHHHHHHHHHCCC >Mature Secondary Structure TTTKQNQPALIQALMKPVAYPHPVKVVELVETHISWVLLTGSYVYKLKKAVHFDFVDAT CCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHEEEEECHHHHHHHHHHHHCCCCHH TLKQRLHFCQEELRLNRRLAPDLYLGVTRILESVDGAKVLDENFESNDPSTKGVVDVAVK HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCHHHHHHH MRQFPVSRLLSVYLSDGVLKTESLKRLAFELAEFHLSVKTAVADGNFGGFDAVINPVHAN HHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHEEEECCCCCCHHHHHHHHHHH LRVLDQLTLPEPLELWLEQHRAWIKSIEPELAFRFKQRLNAGAIRECHGDLHVGNIYLNN HHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHCCCEEEEEEEECC DDRLEVFDAIDFNPSLRWIDPISEMAFLVMDFEVHDHQGDAMVILNEWLEQTGDYKALDL CCCEEEEEEECCCCCCCEECCHHHHHHHHEEEEEECCCCCEEEEHHHHHHHCCCEEEEEC WPWYSAYRALVRAKVSGLQWQQLTSQSQNDSVDQQHLQRLLKDLNLYIQRAREVQQTKSA CHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC GIVLMHGLSGSGKSYISEQLYQQLPAVRLRSDVERERAFGRRPLHKLLGFEKGSMTSGGI CEEEEECCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCCCCCC TPIFQGDPYRPEVTSWLFDQCLPALTQSCLSSGYTTIVDATFLRERERQRMFVLARQQGC CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHEECCCCC PIAIVACECSDLTAQERIATRMGIGTDPSEADLSVRELQKAWIEPLTTFEQELTVRFTEK CEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHEEEECCC TPISIGLERLRVLLNP CCHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]