Click here to switch to the map view.

The map label for this gene is araQ [H]

Identifier: 124022628

GI number: 124022628

Start: 836722

End: 837585

Strand: Direct

Name: araQ [H]

Synonym: P9303_09191

Alternate gene names: 124022628

Gene position: 836722-837585 (Clockwise)

Preceding gene: 124022627

Following gene: 124022630

Centisome position: 31.19

GC content: 53.24

Gene sequence:

>864_bases
ATGGGTCGTTTTCCCTATGTAGAGATGAGGCGTAAGAGCTTGGCTTCGCCACTGCTGAAAGGTCTTCAGTTAGGGGTCCT
TATCGTGTTGGCGCTTGTCATTCTCCTTCCATTGCTTTGGCTGGTAAGCACGTCCTTGAAAGGGCCCGCTGAAGAGATTT
TTACTAGTCCTCCAGCCTTACTACCTGCCGAACCGAGCCTGATGGCGTATTGGCGACTATTCGCCGACAATCCGCTAGGG
ATTTATTTGCTCAACAGCACAGTAGTGAGCTCTTTGGCGGTGGTAGCCAATCTGCTTTTCTGCTCCCTGGCGGCCTATCC
ACTCGCTCGGATGCGCTTTGCCGGAAGAGGTCTGGTCTTGGCCCTTGTGGTGGCAACCATCCTCATTCCTTTTCAGGTGG
TGATGATCCCTTTGTATCTTTTGATGGTGCAGTTGGGATTGCGTAACTCTCTGATGGCCTTGGTGATTCCACAGGCGGCA
ACAGCCTTTGGGCTCTATCTCTTGCGACAGAGTTTTTTGACGGTGCCCGTGGAGCTTGAAGAGGCTGCGCGTATCGATGG
TTGTAGTCGATTGGGTGAATGGTGGAACGTGATGATTCCGGCTGCTCGTGCTGATCTAATCACCCTGGCCATGTTTGTGT
TTATCGGCACTTGGAGCGATTTCCTCTGGCCTTTGGTGATCTTGGATGACCCCAGCCTTTACACCCTTCCACTCGGCCTA
CAGCAGCTCGCCAGCAGCTTCTCCCTTGACTGGAGAATTGTGGCGGCTGGGTCGGTGGTGTCGATTTTGCCGGTGCTGGC
ACTCTTCATCCTTTTGCAGCGCTTTATCCTCCCTAGTTCAAGTGGTGATGCGGTGAAGGGATAG

Upstream 100 bases:

>100_bases
TGTGAATGCGCTTAATCGGCTGGTGGCAGGTTGCGGTCGCCAGTCTCTTCATCCCCAACATGATGCTGTGCTAGCTGATC
GACGGCCAGGCATCTGAACA

Downstream 100 bases:

>100_bases
GTTTTTGATCGCCAAGATTCCAGCCCAGGCTCTTGTCAAGACTTTGAGGGTTCTATGAAGCTCAAGGTTATGGTGACAAC
CCTGGAGCTGATGGTGTGGC

Product: sugar ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 287; Mature: 286

Protein sequence:

>287_residues
MGRFPYVEMRRKSLASPLLKGLQLGVLIVLALVILLPLLWLVSTSLKGPAEEIFTSPPALLPAEPSLMAYWRLFADNPLG
IYLLNSTVVSSLAVVANLLFCSLAAYPLARMRFAGRGLVLALVVATILIPFQVVMIPLYLLMVQLGLRNSLMALVIPQAA
TAFGLYLLRQSFLTVPVELEEAARIDGCSRLGEWWNVMIPAARADLITLAMFVFIGTWSDFLWPLVILDDPSLYTLPLGL
QQLASSFSLDWRIVAAGSVVSILPVLALFILLQRFILPSSSGDAVKG

Sequences:

>Translated_287_residues
MGRFPYVEMRRKSLASPLLKGLQLGVLIVLALVILLPLLWLVSTSLKGPAEEIFTSPPALLPAEPSLMAYWRLFADNPLG
IYLLNSTVVSSLAVVANLLFCSLAAYPLARMRFAGRGLVLALVVATILIPFQVVMIPLYLLMVQLGLRNSLMALVIPQAA
TAFGLYLLRQSFLTVPVELEEAARIDGCSRLGEWWNVMIPAARADLITLAMFVFIGTWSDFLWPLVILDDPSLYTLPLGL
QQLASSFSLDWRIVAAGSVVSILPVLALFILLQRFILPSSSGDAVKG
>Mature_286_residues
GRFPYVEMRRKSLASPLLKGLQLGVLIVLALVILLPLLWLVSTSLKGPAEEIFTSPPALLPAEPSLMAYWRLFADNPLGI
YLLNSTVVSSLAVVANLLFCSLAAYPLARMRFAGRGLVLALVVATILIPFQVVMIPLYLLMVQLGLRNSLMALVIPQAAT
AFGLYLLRQSFLTVPVELEEAARIDGCSRLGEWWNVMIPAARADLITLAMFVFIGTWSDFLWPLVILDDPSLYTLPLGLQ
QLASSFSLDWRIVAAGSVVSILPVLALFILLQRFILPSSSGDAVKG

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0395

COG function: function code G; ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787571, Length=273, Percent_Identity=32.6007326007326, Blast_Score=125, Evalue=3e-30,
Organism=Escherichia coli, GI1789860, Length=267, Percent_Identity=27.7153558052434, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1790464, Length=275, Percent_Identity=26.5454545454545, Blast_Score=75, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 31351; Mature: 31220

Theoretical pI: Translated: 8.66; Mature: 8.66

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGRFPYVEMRRKSLASPLLKGLQLGVLIVLALVILLPLLWLVSTSLKGPAEEIFTSPPAL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCC
LPAEPSLMAYWRLFADNPLGIYLLNSTVVSSLAVVANLLFCSLAAYPLARMRFAGRGLVL
CCCCCHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
ALVVATILIPFQVVMIPLYLLMVQLGLRNSLMALVIPQAATAFGLYLLRQSFLTVPVELE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHH
EAARIDGCSRLGEWWNVMIPAARADLITLAMFVFIGTWSDFLWPLVILDDPSLYTLPLGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCEEEECCCH
QQLASSFSLDWRIVAAGSVVSILPVLALFILLQRFILPSSSGDAVKG
HHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
GRFPYVEMRRKSLASPLLKGLQLGVLIVLALVILLPLLWLVSTSLKGPAEEIFTSPPAL
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCC
LPAEPSLMAYWRLFADNPLGIYLLNSTVVSSLAVVANLLFCSLAAYPLARMRFAGRGLVL
CCCCCHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
ALVVATILIPFQVVMIPLYLLMVQLGLRNSLMALVIPQAATAFGLYLLRQSFLTVPVELE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHH
EAARIDGCSRLGEWWNVMIPAARADLITLAMFVFIGTWSDFLWPLVILDDPSLYTLPLGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCEEEECCCH
QQLASSFSLDWRIVAAGSVVSILPVLALFILLQRFILPSSSGDAVKG
HHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11058132 [H]