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The map label for this gene is psbA

Identifier: 124022119

GI number: 124022119

Start: 406385

End: 407461

Strand: Direct

Name: psbA

Synonym: P9303_04091

Alternate gene names: 124022119

Gene position: 406385-407461 (Clockwise)

Preceding gene: 124022118

Following gene: 124022121

Centisome position: 15.15

GC content: 53.76

Gene sequence:

>1077_bases
ATGACCACCACCATTCGCAGTGGTCGCCTCAGTAGCTGGGAATCCTTCTGCAATTGGGTCACCTCCACCAATAACCGCAT
TTATGTGGGTTGGTTCGGTGTCCTGATGGTTCCCACGCTGTTGGCAGCTGCCATCTGCTTCACCATTGCCTTTATTGCGG
CACCGCCGGTTGATATCGACGGTATCCGTGAGCCTGTTGCTGGCTCTTTCCTCTACGGCAATAACATCATTTCTGGTGCT
GTTGTTCCTTCCAGCAACGCCATCGGCCTGCACTTTTATCCCATTTGGGAAGCTGCTTCTGTTGATGAGTGGCTTTACAA
CGGCGGTCCATACCAGCTTGTTGTGTTCCACTTCCTGATCGGCATCTGTTGCTGGTTGGGTCGCCAATGGGAACTCTCCT
ATCGCTTGGGCATGCGCCCTTGGATCTGTGTGGCCTACAGCGCACCGCTGTCGGCAGCCTTTGCTGTGTTCCTGATCTAT
CCAGTAGGTCAGGGTTCCTTCTCGGATGGCATGCCTTTAGGCATCTCTGGAACCTTCAACTTCATGTTGGTGTTCCAGGC
AGAGCACAACATCCTCATGCATCCCTTCCACATGATTGGTGTGGCGGGCATGTTTGGCGGCAGTTTGTTCTCCGCCATGC
ACGGTTCACTGGTGACCTCATCGTTGATTCGTGAAACCACCGAAACCGAGTCTCAGAACTACGGCTATAAGTTCGGCCAA
GAGGAAGAGACCTACAACATCGTGGCTGCCCACGGTTATTTCGGTCGTCTGATCTTCCAGTACGCCAGCTTCAATAACAG
CCGCAGTCTGCACTTCTTCCTGGCTGCCTGGCCGGTGATCTGCATCTGGATCACCTCACTGGGTATTAGCACCATGGCCT
TCAACTTGAACGGCTTTAACTTCAACCAGTCGGTTCTCGATGCCCAAGGCAGAGTTGTACCAACCTGGGCTGATGTGCTC
AACCGCAGCAACCTCGGTATGGAAGTGATGCACGAGCGTAATGCTCATAACTTCCCTCTCGACCTGGCAGCTGCTGAGTC
CACACCTGTGGCTCTGATTGCTCCTGCGATTGGCTGA

Upstream 100 bases:

>100_bases
CATTTACAGATTGCGCAATGTTCCTTTACAATGGGATCTGGCAGGTTTTGCCTGCGTTTTATAGCTGTCCCTTCGGGGGC
TCTTTTTCTTACTTAACTCA

Downstream 100 bases:

>100_bases
TCTGATCATCCCCAATACAAGGTTTGGCAGCTGCTGAACCTGAAAGCCCCCTCTAAAGAGGGGGCTTTTTTTTATGATTG
TTCTGTTGTATCAGCTCAGA

Product: photosystem II PsbA protein (D1)

Products: NA

Alternate protein names: 32 kDa thylakoid membrane protein; Photosystem II protein D1

Number of amino acids: Translated: 358; Mature: 357

Protein sequence:

>358_residues
MTTTIRSGRLSSWESFCNWVTSTNNRIYVGWFGVLMVPTLLAAAICFTIAFIAAPPVDIDGIREPVAGSFLYGNNIISGA
VVPSSNAIGLHFYPIWEAASVDEWLYNGGPYQLVVFHFLIGICCWLGRQWELSYRLGMRPWICVAYSAPLSAAFAVFLIY
PVGQGSFSDGMPLGISGTFNFMLVFQAEHNILMHPFHMIGVAGMFGGSLFSAMHGSLVTSSLIRETTETESQNYGYKFGQ
EEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVICIWITSLGISTMAFNLNGFNFNQSVLDAQGRVVPTWADVL
NRSNLGMEVMHERNAHNFPLDLAAAESTPVALIAPAIG

Sequences:

>Translated_358_residues
MTTTIRSGRLSSWESFCNWVTSTNNRIYVGWFGVLMVPTLLAAAICFTIAFIAAPPVDIDGIREPVAGSFLYGNNIISGA
VVPSSNAIGLHFYPIWEAASVDEWLYNGGPYQLVVFHFLIGICCWLGRQWELSYRLGMRPWICVAYSAPLSAAFAVFLIY
PVGQGSFSDGMPLGISGTFNFMLVFQAEHNILMHPFHMIGVAGMFGGSLFSAMHGSLVTSSLIRETTETESQNYGYKFGQ
EEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVICIWITSLGISTMAFNLNGFNFNQSVLDAQGRVVPTWADVL
NRSNLGMEVMHERNAHNFPLDLAAAESTPVALIAPAIG
>Mature_357_residues
TTTIRSGRLSSWESFCNWVTSTNNRIYVGWFGVLMVPTLLAAAICFTIAFIAAPPVDIDGIREPVAGSFLYGNNIISGAV
VPSSNAIGLHFYPIWEAASVDEWLYNGGPYQLVVFHFLIGICCWLGRQWELSYRLGMRPWICVAYSAPLSAAFAVFLIYP
VGQGSFSDGMPLGISGTFNFMLVFQAEHNILMHPFHMIGVAGMFGGSLFSAMHGSLVTSSLIRETTETESQNYGYKFGQE
EETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVICIWITSLGISTMAFNLNGFNFNQSVLDAQGRVVPTWADVLN
RSNLGMEVMHERNAHNFPLDLAAAESTPVALIAPAIG

Specific function: This is one of the two reaction center proteins of photosystem II

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the reaction center pufL/M/psbA/D family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PSBA_PROM3 (A2C6Q1)

Other databases:

- EMBL:   CP000554
- EMBL:   CP000554
- RefSeq:   YP_001016426.1
- RefSeq:   YP_001017875.1
- ProteinModelPortal:   A2C6Q1
- SMR:   A2C6Q1
- STRING:   A2C6Q1
- GeneID:   4777504
- GeneID:   4777705
- GenomeReviews:   CP000554_GR
- GenomeReviews:   CP000554_GR
- KEGG:   pmf:P9303_04091
- KEGG:   pmf:P9303_18681
- eggNOG:   NOG04871
- HOGENOM:   HBG284766
- OMA:   GIWFTSM
- ProtClustDB:   CLSK892431
- GO:   GO:0006810
- HAMAP:   MF_01379
- InterPro:   IPR000484
- InterPro:   IPR005867
- Gene3D:   G3DSA:1.20.85.10
- PRINTS:   PR00256
- TIGRFAMs:   TIGR01151

Pfam domain/function: PF00124 Photo_RC; SSF81483 Photo_RC_L/M

EC number: NA

Molecular weight: Translated: 39443; Mature: 39311

Theoretical pI: Translated: 5.96; Mature: 5.96

Prosite motif: PS00244 REACTION_CENTER

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x125c3ef4)-; HASH(0x132d989c)-; HASH(0x128c06e0)-; HASH(0x128968dc)-; HASH(0x13591420)-;

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTTIRSGRLSSWESFCNWVTSTNNRIYVGWFGVLMVPTLLAAAICFTIAFIAAPPVDID
CCCCCCCCCCCCHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
GIREPVAGSFLYGNNIISGAVVPSSNAIGLHFYPIWEAASVDEWLYNGGPYQLVVFHFLI
CCCCCCCCCEEECCCEEECEEECCCCEEEEEEEECCCCCCHHHHHHCCCCHHHHHHHHHH
GICCWLGRQWELSYRLGMRPWICVAYSAPLSAAFAVFLIYPVGQGSFSDGMPLGISGTFN
HHHHHCCCCEEEEEECCCCCEEEEEECCCHHHHEEEEEEEECCCCCCCCCCCEEECCCEE
FMLVFQAEHNILMHPFHMIGVAGMFGGSLFSAMHGSLVTSSLIRETTETESQNYGYKFGQ
EEEEEEECCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
EEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVICIWITSLGISTMAFNLNGFN
CCCCEEEEEECCHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHCCCEEEEEEECCCC
FNQSVLDAQGRVVPTWADVLNRSNLGMEVMHERNAHNFPLDLAAAESTPVALIAPAIG
CCHHHHCCCCCEEEHHHHHHCCCCCCHHHHHHCCCCCCCEEEECCCCCCEEEEECCCH
>Mature Secondary Structure 
TTTIRSGRLSSWESFCNWVTSTNNRIYVGWFGVLMVPTLLAAAICFTIAFIAAPPVDID
CCCCCCCCCCCHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
GIREPVAGSFLYGNNIISGAVVPSSNAIGLHFYPIWEAASVDEWLYNGGPYQLVVFHFLI
CCCCCCCCCEEECCCEEECEEECCCCEEEEEEEECCCCCCHHHHHHCCCCHHHHHHHHHH
GICCWLGRQWELSYRLGMRPWICVAYSAPLSAAFAVFLIYPVGQGSFSDGMPLGISGTFN
HHHHHCCCCEEEEEECCCCCEEEEEECCCHHHHEEEEEEEECCCCCCCCCCCEEECCCEE
FMLVFQAEHNILMHPFHMIGVAGMFGGSLFSAMHGSLVTSSLIRETTETESQNYGYKFGQ
EEEEEEECCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
EEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVICIWITSLGISTMAFNLNGFN
CCCCEEEEEECCHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHCCCEEEEEEECCCC
FNQSVLDAQGRVVPTWADVLNRSNLGMEVMHERNAHNFPLDLAAAESTPVALIAPAIG
CCHHHHCCCCCEEEHHHHHHCCCCCCHHHHHHCCCCCCCEEEECCCCCCEEEEECCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA