| Definition | Prochlorococcus marinus str. MIT 9303, complete genome. |
|---|---|
| Accession | NC_008820 |
| Length | 2,682,675 |
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The map label for this gene is rbn
Identifier: 124021942
GI number: 124021942
Start: 249247
End: 250191
Strand: Direct
Name: rbn
Synonym: P9303_02291
Alternate gene names: NA
Gene position: 249247-250191 (Clockwise)
Preceding gene: 124021938
Following gene: 124021943
Centisome position: 9.29
GC content: 51.22
Gene sequence:
>945_bases ATGCCAAGCGTGGAGCTTCGTTGGAAACGTTGGGCTAGATGGTTGGTCGCAAGTTTGTGGCGGGCTTACCTTCGCTGGAT GCGTTGTGATTGTGTAGATCTTAGTGCTGCTTTTGCTTATTACACGTTGCAGTCATTTTTCCCAATTCTGTTGATCTCGC TGTCTGTGGCCTCTTGGTTTCTTGGCCGTCAGCATGGTCTTGATCAGCAAATTGTTGACTTTACTGCTCAGGTGCTCCCA CCTTCTGTTGTTGGTTTGGTGGAATCAACATTGGTGAAACTTGTCAAACAAGGCTTTGGTGCAGGATTGCTCGGAGCTGT GTTTCTGATGGTGACTGCTGGTAACGCCTATTTAACTTTGCAGCGTGGTGCTGATCGTCTTTGGCGAGACCTGTTGCCCC TGCCTTCAACACCTGCACCATTTGTTGTTCAGCTAACCCGCTTCCTGCGTGCTCGAATTGAGGCTTTTGTGGTGGTGATC ATGGTCGGGGTGCTTGTTGTTGTTGATCAGATCAGCGTCAATGTACGCATGATCCCAGGTGCTGTTTGGGATGAGCTGAT TAGCACGACACCATGGCTTGCCGCTTTGTTGTCTCGAGTGCCTGTGCTTCAGGTAGGTCAGTTCGTTGTGCCATTACTTG GCCTCTCTGGGATGGCGTTGTTGTTGCAGGCTTTGCTACCTAGTAGACGTGTCCCACTCAGGCCCCTTGTGCCTGGGTCT TTTTTGATTGGTACGCTTTTGACGATCCTCAACCTGGTCGTTAGCCGCAGCATTCTTTCGCTGGGCACGCGTTATCAGGC TTATGGCTTCATCGGTGGTGTTCTGGTGCTCACCTTTTGGGTTTGGATGGTCGGTGTGATCCTTTACTTTGGGCAGTGCT GGAGCGTGGTTCTTGCCAGTAGGAGTCGGCATCACTGGGGAGAACCGAACCCGCTAAAAAGCTGA
Upstream 100 bases:
>100_bases CTTTTTTGATGTGCAAGTCAGTGTGATTTTTAAAGAAGATAATCAAATAGACAACAGAGCTCTTTGATTGGCTGGCGCTA GCGTTATTAGCAGTAGATGA
Downstream 100 bases:
>100_bases TTTCACAACGTCTTCAGTCAGCATAAAATTGATTTTTAATTGATTGTTGTGCCTTCTCTGATGCGAGCACGCTCTGTCAG GTTGCCGCCGGCCTTTGCAG
Product: serum resistance locus BrkB-like protein
Products: NA
Alternate protein names: Ribonuclease BN; Ribonuclease BN-Like Family Protein; YihY Family Protein; Serum Resistance Locus BrkB-Like; Serum Resistance Locus BrkB
Number of amino acids: Translated: 314; Mature: 313
Protein sequence:
>314_residues MPSVELRWKRWARWLVASLWRAYLRWMRCDCVDLSAAFAYYTLQSFFPILLISLSVASWFLGRQHGLDQQIVDFTAQVLP PSVVGLVESTLVKLVKQGFGAGLLGAVFLMVTAGNAYLTLQRGADRLWRDLLPLPSTPAPFVVQLTRFLRARIEAFVVVI MVGVLVVVDQISVNVRMIPGAVWDELISTTPWLAALLSRVPVLQVGQFVVPLLGLSGMALLLQALLPSRRVPLRPLVPGS FLIGTLLTILNLVVSRSILSLGTRYQAYGFIGGVLVLTFWVWMVGVILYFGQCWSVVLASRSRHHWGEPNPLKS
Sequences:
>Translated_314_residues MPSVELRWKRWARWLVASLWRAYLRWMRCDCVDLSAAFAYYTLQSFFPILLISLSVASWFLGRQHGLDQQIVDFTAQVLP PSVVGLVESTLVKLVKQGFGAGLLGAVFLMVTAGNAYLTLQRGADRLWRDLLPLPSTPAPFVVQLTRFLRARIEAFVVVI MVGVLVVVDQISVNVRMIPGAVWDELISTTPWLAALLSRVPVLQVGQFVVPLLGLSGMALLLQALLPSRRVPLRPLVPGS FLIGTLLTILNLVVSRSILSLGTRYQAYGFIGGVLVLTFWVWMVGVILYFGQCWSVVLASRSRHHWGEPNPLKS >Mature_313_residues PSVELRWKRWARWLVASLWRAYLRWMRCDCVDLSAAFAYYTLQSFFPILLISLSVASWFLGRQHGLDQQIVDFTAQVLPP SVVGLVESTLVKLVKQGFGAGLLGAVFLMVTAGNAYLTLQRGADRLWRDLLPLPSTPAPFVVQLTRFLRARIEAFVVVIM VGVLVVVDQISVNVRMIPGAVWDELISTTPWLAALLSRVPVLQVGQFVVPLLGLSGMALLLQALLPSRRVPLRPLVPGSF LIGTLLTILNLVVSRSILSLGTRYQAYGFIGGVLVLTFWVWMVGVILYFGQCWSVVLASRSRHHWGEPNPLKS
Specific function: Unknown
COG id: COG1295
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34951; Mature: 34820
Theoretical pI: Translated: 10.94; Mature: 10.94
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPSVELRWKRWARWLVASLWRAYLRWMRCDCVDLSAAFAYYTLQSFFPILLISLSVASWF CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LGRQHGLDQQIVDFTAQVLPPSVVGLVESTLVKLVKQGFGAGLLGAVFLMVTAGNAYLTL HHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCEEEEE QRGADRLWRDLLPLPSTPAPFVVQLTRFLRARIEAFVVVIMVGVLVVVDQISVNVRMIPG HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCH AVWDELISTTPWLAALLSRVPVLQVGQFVVPLLGLSGMALLLQALLPSRRVPLRPLVPGS HHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCHH FLIGTLLTILNLVVSRSILSLGTRYQAYGFIGGVLVLTFWVWMVGVILYFGQCWSVVLAS HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RSRHHWGEPNPLKS HHCCCCCCCCCCCC >Mature Secondary Structure PSVELRWKRWARWLVASLWRAYLRWMRCDCVDLSAAFAYYTLQSFFPILLISLSVASWF CCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LGRQHGLDQQIVDFTAQVLPPSVVGLVESTLVKLVKQGFGAGLLGAVFLMVTAGNAYLTL HHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCEEEEE QRGADRLWRDLLPLPSTPAPFVVQLTRFLRARIEAFVVVIMVGVLVVVDQISVNVRMIPG HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEECCH AVWDELISTTPWLAALLSRVPVLQVGQFVVPLLGLSGMALLLQALLPSRRVPLRPLVPGS HHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCHH FLIGTLLTILNLVVSRSILSLGTRYQAYGFIGGVLVLTFWVWMVGVILYFGQCWSVVLAS HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RSRHHWGEPNPLKS HHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA