Click here to switch to the map view.

The map label for this gene is rpmC

Identifier: 124026700

GI number: 124026700

Start: 1642990

End: 1643202

Strand: Reverse

Name: rpmC

Synonym: NATL1_19951

Alternate gene names: 124026700

Gene position: 1643202-1642990 (Counterclockwise)

Preceding gene: 124026701

Following gene: 124026699

Centisome position: 88.12

GC content: 40.38

Gene sequence:

>213_bases
ATGAGCAAAAAAACTACGAAAGATGTACGGAATCTCTCTGATTCCGAGATGTCAGACAAGATTCAAAATCTTCGTAAAGA
ACTTTTTGACCTTCGTTTTAAGCAAGCCACTAGACAGCTAGCTAAAACTCACCGTTTCAAAGAGGCACGAACTGAATTGG
CTCAACTTTTAACGGTTTCTAACGAGCGAAGCCGCTCAAACACATCATCTTGA

Upstream 100 bases:

>100_bases
CTGTTAAAACAAAATTTATTTCCCTAGATGAAGATCTCAATAAGGGAAATTATAAACCTGCTAAAACGCCAGTTACAGCA
GATGATTCGGAGTCATCATC

Downstream 100 bases:

>100_bases
TTTTTTAGTTATGGCACTTAAGGAAATGGTTGGCACTGTTGTCAGTGACAAAATGCAAAAAACAGTAGTCGTAGCTGTGG
AAAATAGATTTCCACATCCT

Product: 50S ribosomal protein L29

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 70; Mature: 69

Protein sequence:

>70_residues
MSKKTTKDVRNLSDSEMSDKIQNLRKELFDLRFKQATRQLAKTHRFKEARTELAQLLTVSNERSRSNTSS

Sequences:

>Translated_70_residues
MSKKTTKDVRNLSDSEMSDKIQNLRKELFDLRFKQATRQLAKTHRFKEARTELAQLLTVSNERSRSNTSS
>Mature_69_residues
SKKTTKDVRNLSDSEMSDKIQNLRKELFDLRFKQATRQLAKTHRFKEARTELAQLLTVSNERSRSNTSS

Specific function: Unknown

COG id: COG0255

COG function: function code J; Ribosomal protein L29

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L29P family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RL29_PROM1 (A2C4Z1)

Other databases:

- EMBL:   CP000553
- RefSeq:   YP_001015815.1
- ProteinModelPortal:   A2C4Z1
- SMR:   A2C4Z1
- STRING:   A2C4Z1
- GeneID:   4780130
- GenomeReviews:   CP000553_GR
- KEGG:   pme:NATL1_19951
- eggNOG:   COG0255
- HOGENOM:   HBG730819
- OMA:   NTHRFKE
- ProtClustDB:   PRK00306
- BioCyc:   PMAR167555:NATL1_19951-MONOMER
- GO:   GO:0005840
- GO:   GO:0006412
- HAMAP:   MF_00374_B
- InterPro:   IPR001854
- Gene3D:   G3DSA:1.10.287.310
- TIGRFAMs:   TIGR00012

Pfam domain/function: PF00831 Ribosomal_L29; SSF46561 Ribosomal_L29

EC number: NA

Molecular weight: Translated: 8201; Mature: 8070

Theoretical pI: Translated: 11.18; Mature: 11.18

Prosite motif: PS00579 RIBOSOMAL_L29

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKKTTKDVRNLSDSEMSDKIQNLRKELFDLRFKQATRQLAKTHRFKEARTELAQLLTVS
CCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NERSRSNTSS
HHHCCCCCCC
>Mature Secondary Structure 
SKKTTKDVRNLSDSEMSDKIQNLRKELFDLRFKQATRQLAKTHRFKEARTELAQLLTVS
CCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NERSRSNTSS
HHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA