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The map label for this gene is yqxC [H]

Identifier: 124026568

GI number: 124026568

Start: 1520947

End: 1521741

Strand: Reverse

Name: yqxC [H]

Synonym: NATL1_18631

Alternate gene names: 124026568

Gene position: 1521741-1520947 (Counterclockwise)

Preceding gene: 124026572

Following gene: 124026565

Centisome position: 81.61

GC content: 37.99

Gene sequence:

>795_bases
ATGACTAAAAAATCGCGATTAGATCTTCACTTGCTGACTAAAGGGTTGGTGAAAACACGTCAAGAGGCTCAGAACCTTAT
CAGAGCTGGCAAAGTTAAAACAATTAACGGTCAAATTCTTGATAAGCCAGGCCAAGAAGTTTTAAAAGATCTTGAGATAG
AAGTTACGCAGCCCTTGAGATATGTATCTAGAGGGGGTGAAAAGTTGGCTGAAGCGTTTAATCAATTTCCTCTAGATATT
AAGAATAGGATTTGTTTAGATGCTGGAATTTCAACTGGTGGTTTTACAGATTGTCTTTTACAGCAAGGAGCGGCAAAGGT
TTATGGAGTTGATGTTGGCTATGGGCAGACTGCATGGAGTATTAGAAATGATCCAAGAGTGGTTCTTTTGGAACGGACCA
ATATTAGGCATTTAACTCCTGAAAAATTATTCAATGATGGAGACCCAATACCAGATTTCGCAGTAGCAGACTTATCTTTT
ATCTCTCTTAAAATTGTTTTACCGAGTATAAAATCTCTTCTTCAATCTGACCGGTCTGAGTTATTGGTATTAGTGAAACC
TCAATTTGAGGTTGGCAAAGATAAAGTTGGCAAAGGTGGAGTAGTTCGTGATCATTCGCTACATGCTGAGGCTGTAGAGG
GTGTGGTTAACGAATCTAAAAAATATGGATGGAATCCGAAAGGGTTAATTGCATCGCCTTTAAAAGGTCCTGCTGGTAAT
CAAGAATATCTTCTTTGGATGGGTGATGAGGTAAAAGGCAATATTGAACTCGAAAAATTATTTAATGTTTTTTGA

Upstream 100 bases:

>100_bases
ACAAAACCTTATGGTCAGTTGAATAGATTCTCTATTGAAAAAGAGGATAAGCACGAGTTCTGCGGTTTTTGTTCCGTTTC
CTGTTTGTTTTTGTAAACAA

Downstream 100 bases:

>100_bases
GATTAAAGAGCTATTTCGTTCCTGTCCCCCGTTCTGATTCGAACAACGGAATCAATTGGGCTAACAAAAATTTTGCCATC
TCCGATCTCTCCTGTCTTGG

Product: rRNA methyltransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 264; Mature: 263

Protein sequence:

>264_residues
MTKKSRLDLHLLTKGLVKTRQEAQNLIRAGKVKTINGQILDKPGQEVLKDLEIEVTQPLRYVSRGGEKLAEAFNQFPLDI
KNRICLDAGISTGGFTDCLLQQGAAKVYGVDVGYGQTAWSIRNDPRVVLLERTNIRHLTPEKLFNDGDPIPDFAVADLSF
ISLKIVLPSIKSLLQSDRSELLVLVKPQFEVGKDKVGKGGVVRDHSLHAEAVEGVVNESKKYGWNPKGLIASPLKGPAGN
QEYLLWMGDEVKGNIELEKLFNVF

Sequences:

>Translated_264_residues
MTKKSRLDLHLLTKGLVKTRQEAQNLIRAGKVKTINGQILDKPGQEVLKDLEIEVTQPLRYVSRGGEKLAEAFNQFPLDI
KNRICLDAGISTGGFTDCLLQQGAAKVYGVDVGYGQTAWSIRNDPRVVLLERTNIRHLTPEKLFNDGDPIPDFAVADLSF
ISLKIVLPSIKSLLQSDRSELLVLVKPQFEVGKDKVGKGGVVRDHSLHAEAVEGVVNESKKYGWNPKGLIASPLKGPAGN
QEYLLWMGDEVKGNIELEKLFNVF
>Mature_263_residues
TKKSRLDLHLLTKGLVKTRQEAQNLIRAGKVKTINGQILDKPGQEVLKDLEIEVTQPLRYVSRGGEKLAEAFNQFPLDIK
NRICLDAGISTGGFTDCLLQQGAAKVYGVDVGYGQTAWSIRNDPRVVLLERTNIRHLTPEKLFNDGDPIPDFAVADLSFI
SLKIVLPSIKSLLQSDRSELLVLVKPQFEVGKDKVGKGGVVRDHSLHAEAVEGVVNESKKYGWNPKGLIASPLKGPAGNQ
EYLLWMGDEVKGNIELEKLFNVF

Specific function: Unknown

COG id: COG1189

COG function: function code J; Predicted rRNA methylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004538
- InterPro:   IPR002877
- InterPro:   IPR002942 [H]

Pfam domain/function: PF01728 FtsJ; PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 29183; Mature: 29052

Theoretical pI: Translated: 9.01; Mature: 9.01

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKKSRLDLHLLTKGLVKTRQEAQNLIRAGKVKTINGQILDKPGQEVLKDLEIEVTQPLR
CCCCHHCHHHHHHHHHHHHHHHHHHHHHHCCEEEECCEEECCCHHHHHHHCCHHHHHHHH
YVSRGGEKLAEAFNQFPLDIKNRICLDAGISTGGFTDCLLQQGAAKVYGVDVGYGQTAWS
HHHCCHHHHHHHHHCCCCCCCCCEEEECCCCCCCHHHHHHHCCCCEEEEEECCCCCCEEE
IRNDPRVVLLERTNIRHLTPEKLFNDGDPIPDFAVADLSFISLKIVLPSIKSLLQSDRSE
ECCCCEEEEEECCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC
LLVLVKPQFEVGKDKVGKGGVVRDHSLHAEAVEGVVNESKKYGWNPKGLIASPLKGPAGN
EEEEECCCHHCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCC
QEYLLWMGDEVKGNIELEKLFNVF
CEEEEEECCCCCCCEEHHHHHCCC
>Mature Secondary Structure 
TKKSRLDLHLLTKGLVKTRQEAQNLIRAGKVKTINGQILDKPGQEVLKDLEIEVTQPLR
CCCHHCHHHHHHHHHHHHHHHHHHHHHHCCEEEECCEEECCCHHHHHHHCCHHHHHHHH
YVSRGGEKLAEAFNQFPLDIKNRICLDAGISTGGFTDCLLQQGAAKVYGVDVGYGQTAWS
HHHCCHHHHHHHHHCCCCCCCCCEEEECCCCCCCHHHHHHHCCCCEEEEEECCCCCCEEE
IRNDPRVVLLERTNIRHLTPEKLFNDGDPIPDFAVADLSFISLKIVLPSIKSLLQSDRSE
ECCCCEEEEEECCCCCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC
LLVLVKPQFEVGKDKVGKGGVVRDHSLHAEAVEGVVNESKKYGWNPKGLIASPLKGPAGN
EEEEECCCHHCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCC
QEYLLWMGDEVKGNIELEKLFNVF
CEEEEEECCCCCCCEEHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377; 2507400 [H]