Click here to switch to the map view.

The map label for this gene is rpoZ [H]

Identifier: 124026536

GI number: 124026536

Start: 1493108

End: 1493320

Strand: Reverse

Name: rpoZ [H]

Synonym: NATL1_18311

Alternate gene names: 124026536

Gene position: 1493320-1493108 (Counterclockwise)

Preceding gene: 124026538

Following gene: 124026535

Centisome position: 80.08

GC content: 37.56

Gene sequence:

>213_bases
TTGAATTCCAACGATTTAGCAAAAAGAGGCGAGAGTCTTATCAGACACTCCACTAATCGCTACCTCACTACTGTGAGGAT
TGCTTTTAGAGCAAAGCAAAGGAGATTTGATGATTTTGATGGACTTTTAGAAGAATCCACAGTTAAACCAGTACAAAGAG
CCATAATTGAATTAAGCGATGAACAAGATCAACCTGATTTATTACCTGGTTAG

Upstream 100 bases:

>100_bases
CATCACACTTAATTATTTGGTGAAAAATATAGAAATGAACGATTCTCTCCTAGAATAAAGTATCAATAAAGTTTTAAGTG
TGATTAAGTCAGGTTCAGGA

Downstream 100 bases:

>100_bases
GTGATCAAAAAAGAAGGTCCGGGTTGGAGAATAATTTTTGATTCCTCAAGAGATAACTTTTCTACGCTTATAGGAGGTGA
AACATGGGCAATAGAGTTGG

Product: DNA-directed RNA polymerase subunit omega

Products: NA

Alternate protein names: RNAP omega subunit; RNA polymerase omega subunit; Transcriptase subunit omega [H]

Number of amino acids: Translated: 70; Mature: 70

Protein sequence:

>70_residues
MNSNDLAKRGESLIRHSTNRYLTTVRIAFRAKQRRFDDFDGLLEESTVKPVQRAIIELSDEQDQPDLLPG

Sequences:

>Translated_70_residues
MNSNDLAKRGESLIRHSTNRYLTTVRIAFRAKQRRFDDFDGLLEESTVKPVQRAIIELSDEQDQPDLLPG
>Mature_70_residues
MNSNDLAKRGESLIRHSTNRYLTTVRIAFRAKQRRFDDFDGLLEESTVKPVQRAIIELSDEQDQPDLLPG

Specific function: Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits [H]

COG id: COG1758

COG function: function code K; DNA-directed RNA polymerase, subunit K/omega

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA polymerase subunit omega family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003716
- InterPro:   IPR006110 [H]

Pfam domain/function: PF01192 RNA_pol_Rpb6 [H]

EC number: =2.7.7.6 [H]

Molecular weight: Translated: 8073; Mature: 8073

Theoretical pI: Translated: 5.83; Mature: 5.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSNDLAKRGESLIRHSTNRYLTTVRIAFRAKQRRFDDFDGLLEESTVKPVQRAIIELSD
CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCC
EQDQPDLLPG
CCCCCCCCCC
>Mature Secondary Structure
MNSNDLAKRGESLIRHSTNRYLTTVRIAFRAKQRRFDDFDGLLEESTVKPVQRAIIELSD
CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCC
EQDQPDLLPG
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA