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The map label for this gene is ylmH [H]

Identifier: 124026489

GI number: 124026489

Start: 1463936

End: 1464724

Strand: Direct

Name: ylmH [H]

Synonym: NATL1_17841

Alternate gene names: 124026489

Gene position: 1463936-1464724 (Clockwise)

Preceding gene: 124026488

Following gene: 124026491

Centisome position: 78.51

GC content: 35.74

Gene sequence:

>789_bases
ATGCGTCTTCCAAAAGAAAAGATCCTATTTAAAAGTCCTTTTCATAAAGAGTTAGAGACTTTGCTTCACTTTGCGGAAAA
GGCTCTAAGCGAGAGAGCAGCAATATGGTCCCCTTTCATATCAGCACAACTAATAGAGGAAGTTAAAAATAGATTTAATA
ATTTGAATGACATAAGTCTTATTTTCGAGGGAGGATTCCCAAGCGCAGAGCGTAAAAGGATATGTTTCCTAAGATCTGTA
GAAGAGATGCACTCTCCCTCTATCGAAATTCCTATCAAAGGTATTTATATAAAAGGCAATTTCCTGTTTGATAGAGCTAA
ACAAAATGATTTTAGAGATCTCTTATATGAACTTCATGCGCAAGCTGATGATATTGGAGACATTTGGTTAATAAGAGACA
GAGGAGCTCAAGCTATTTGCACAAAAAAATGTGCTGATTCAATAAATCAAAAGATTGGAAAGCTAAGAGAAGTTGAAATA
ACAATCCACGCATTAGATTTAAACGAGATGGAGATCCCTTTCAATAGGCCTAAGAAAGTAATCAACACAGTTGAGGCATC
TACCAGGATTGACGCGATAGCCTCCGCAGGTTTTGGACTATCAAGATCAAAAGTAATTAAACAAATCAAGGAAGGGTGTT
TGCGACTTAACTGGGCTTTGAATGAACAGCCCAGTAAATCGGTAAATATTGGAGACCTTATTCATTTAGACAAAAAAGGT
TCACTTAAAATTTTAAATATTGATAAAACAAAAAAAGAGCGCTGGAGAATCAAATTACTAAGGCAGTGA

Upstream 100 bases:

>100_bases
TGATCAAAGATTGATAATTGTATTTCTCTAAATATGGGAAGAAAACAACACAACAGTCTAAACTAATTATCAATAAGATG
AGAAAATTCTATCTTTTTTA

Downstream 100 bases:

>100_bases
GGATAAGGTCCTACTGCCTGCTAACTTCATTAAGGAACTTGACACTTCAATTCTAAGATGGTTCGTAAGGGCGATTAGCT
CAGAGGTAGAGCACTACCTT

Product: S4-like domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 262

Protein sequence:

>262_residues
MRLPKEKILFKSPFHKELETLLHFAEKALSERAAIWSPFISAQLIEEVKNRFNNLNDISLIFEGGFPSAERKRICFLRSV
EEMHSPSIEIPIKGIYIKGNFLFDRAKQNDFRDLLYELHAQADDIGDIWLIRDRGAQAICTKKCADSINQKIGKLREVEI
TIHALDLNEMEIPFNRPKKVINTVEASTRIDAIASAGFGLSRSKVIKQIKEGCLRLNWALNEQPSKSVNIGDLIHLDKKG
SLKILNIDKTKKERWRIKLLRQ

Sequences:

>Translated_262_residues
MRLPKEKILFKSPFHKELETLLHFAEKALSERAAIWSPFISAQLIEEVKNRFNNLNDISLIFEGGFPSAERKRICFLRSV
EEMHSPSIEIPIKGIYIKGNFLFDRAKQNDFRDLLYELHAQADDIGDIWLIRDRGAQAICTKKCADSINQKIGKLREVEI
TIHALDLNEMEIPFNRPKKVINTVEASTRIDAIASAGFGLSRSKVIKQIKEGCLRLNWALNEQPSKSVNIGDLIHLDKKG
SLKILNIDKTKKERWRIKLLRQ
>Mature_262_residues
MRLPKEKILFKSPFHKELETLLHFAEKALSERAAIWSPFISAQLIEEVKNRFNNLNDISLIFEGGFPSAERKRICFLRSV
EEMHSPSIEIPIKGIYIKGNFLFDRAKQNDFRDLLYELHAQADDIGDIWLIRDRGAQAICTKKCADSINQKIGKLREVEI
TIHALDLNEMEIPFNRPKKVINTVEASTRIDAIASAGFGLSRSKVIKQIKEGCLRLNWALNEQPSKSVNIGDLIHLDKKG
SLKILNIDKTKKERWRIKLLRQ

Specific function: Unknown

COG id: COG2302

COG function: function code S; Uncharacterized conserved protein, contains S4-like domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002942 [H]

Pfam domain/function: PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 30145; Mature: 30145

Theoretical pI: Translated: 10.06; Mature: 10.06

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLPKEKILFKSPFHKELETLLHFAEKALSERAAIWSPFISAQLIEEVKNRFNNLNDISL
CCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
IFEGGFPSAERKRICFLRSVEEMHSPSIEIPIKGIYIKGNFLFDRAKQNDFRDLLYELHA
EEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEEEEECCEEEECCCCCHHHHHHHHHHH
QADDIGDIWLIRDRGAQAICTKKCADSINQKIGKLREVEITIHALDLNEMEIPFNRPKKV
CCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCEEEEEEEEEEEECCCEECCCCCHHHH
INTVEASTRIDAIASAGFGLSRSKVIKQIKEGCLRLNWALNEQPSKSVNIGDLIHLDKKG
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHEEEEEECCCCCCCCCCCCCEEEECCCC
SLKILNIDKTKKERWRIKLLRQ
CEEEEECCCCHHHHHHHHCCCC
>Mature Secondary Structure
MRLPKEKILFKSPFHKELETLLHFAEKALSERAAIWSPFISAQLIEEVKNRFNNLNDISL
CCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
IFEGGFPSAERKRICFLRSVEEMHSPSIEIPIKGIYIKGNFLFDRAKQNDFRDLLYELHA
EEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEEEEECCEEEECCCCCHHHHHHHHHHH
QADDIGDIWLIRDRGAQAICTKKCADSINQKIGKLREVEITIHALDLNEMEIPFNRPKKV
CCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCEEEEEEEEEEEECCCEECCCCCHHHH
INTVEASTRIDAIASAGFGLSRSKVIKQIKEGCLRLNWALNEQPSKSVNIGDLIHLDKKG
HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHEEEEEECCCCCCCCCCCCCEEEECCCC
SLKILNIDKTKKERWRIKLLRQ
CEEEEECCCCHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9045828; 9384377 [H]