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The map label for this gene is yjfH [C]

Identifier: 124026423

GI number: 124026423

Start: 1403615

End: 1404451

Strand: Reverse

Name: yjfH [C]

Synonym: NATL1_17181

Alternate gene names: 124026423

Gene position: 1404451-1403615 (Counterclockwise)

Preceding gene: 124026424

Following gene: 124026422

Centisome position: 75.32

GC content: 37.75

Gene sequence:

>837_bases
TTGATTACAAGTAAAAGAAACCCTTTGGTTCGAAAATTAAGGGGTCTTTTGAAAAAAACTGGACGTGAAGAGCATTCTTC
TCTTTTGCTTGAGGGGTCTCATTTGTTAGAAGAGGCTTTGAAAACAAATTTTTTGCCAACAGAAGTTATTGCAACTCCTG
AATGGTGTGATCAGCATGAGGAAATTTTAAAAAAAATAGCTTCAAGAACTTTGTTAACCCTAGTAAACAAAAACGTTTTA
GAAACATCTTTGTCAACAGTCACACCTGATGGTGTCGCAACGATATTCCCAATGCAAGGGTTACCAAAATCGGGAAAAGC
CCCTAAACATATTTTGGCTTTGGATAGGATTCAAGATCCAGGTAATTTGGGGAATTTATTTCGATCAGGTCTTGCTGGTG
AATATGAAGTTATGTGGCTAGCTTCTGGAGCCGATCCACTTAATCAAAAGGTTTTAAGATCCTCCGCTGGCTCAGTTCTT
CATATGCCTTTTGAACGGATTGGACATTCATCTTCTTCAAGTATTGAAATGCTTGTTTCAAAACTCAATATTGCAATTGA
TGATAATTACCAAGTAGTAGGAACAATTTCACCGAATAAAATTACTGATAAGAAAGTGAAACCTTATTGGGAATTAGACT
GGGATCTCCCTACAGTATTGGTTCTTGGTAATGAGGGTTCAGGTGTTCATGCTTCAATTGAAGCCTGTTGTACAGACTTC
GTTACGTTGCCTCATAGCTCATTAGTTGATTCACTTAATGTGGCATCTGCTGCAGTTCCTCTCTTGTTGGAGCGACAAAG
AGTAAAAATGGTTAAGGGTATCCAAAAAAAATCGTGA

Upstream 100 bases:

>100_bases
AATTTAATAAGAAAATAAGTGGTTTTTAATGCAAGAAATTTTTCTGCTTTTCAAAAATTAAATAATTTGAGGTTAGAAAA
TTAATAATTCATATTCGCCA

Downstream 100 bases:

>100_bases
GTGAAATTTCTTTTGACTTTGACTTGATTGTTGTCGGAGCTGGATATGGAGGTTTTGATGCGGCTAAACATGCGGCAGAG
GCTGGCTTGAAAGTGGCGAT

Product: tRNA/rRNA methyltransferase (SpoU)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 278; Mature: 278

Protein sequence:

>278_residues
MITSKRNPLVRKLRGLLKKTGREEHSSLLLEGSHLLEEALKTNFLPTEVIATPEWCDQHEEILKKIASRTLLTLVNKNVL
ETSLSTVTPDGVATIFPMQGLPKSGKAPKHILALDRIQDPGNLGNLFRSGLAGEYEVMWLASGADPLNQKVLRSSAGSVL
HMPFERIGHSSSSSIEMLVSKLNIAIDDNYQVVGTISPNKITDKKVKPYWELDWDLPTVLVLGNEGSGVHASIEACCTDF
VTLPHSSLVDSLNVASAAVPLLLERQRVKMVKGIQKKS

Sequences:

>Translated_278_residues
MITSKRNPLVRKLRGLLKKTGREEHSSLLLEGSHLLEEALKTNFLPTEVIATPEWCDQHEEILKKIASRTLLTLVNKNVL
ETSLSTVTPDGVATIFPMQGLPKSGKAPKHILALDRIQDPGNLGNLFRSGLAGEYEVMWLASGADPLNQKVLRSSAGSVL
HMPFERIGHSSSSSIEMLVSKLNIAIDDNYQVVGTISPNKITDKKVKPYWELDWDLPTVLVLGNEGSGVHASIEACCTDF
VTLPHSSLVDSLNVASAAVPLLLERQRVKMVKGIQKKS
>Mature_278_residues
MITSKRNPLVRKLRGLLKKTGREEHSSLLLEGSHLLEEALKTNFLPTEVIATPEWCDQHEEILKKIASRTLLTLVNKNVL
ETSLSTVTPDGVATIFPMQGLPKSGKAPKHILALDRIQDPGNLGNLFRSGLAGEYEVMWLASGADPLNQKVLRSSAGSVL
HMPFERIGHSSSSSIEMLVSKLNIAIDDNYQVVGTISPNKITDKKVKPYWELDWDLPTVLVLGNEGSGVHASIEACCTDF
VTLPHSSLVDSLNVASAAVPLLLERQRVKMVKGIQKKS

Specific function: Unknown

COG id: COG0566

COG function: function code J; rRNA methylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase TrmH family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001537
- InterPro:   IPR013123 [H]

Pfam domain/function: PF00588 SpoU_methylase; PF08032 SpoU_sub_bind [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 30445; Mature: 30445

Theoretical pI: Translated: 8.49; Mature: 8.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITSKRNPLVRKLRGLLKKTGREEHSSLLLEGSHLLEEALKTNFLPTEVIATPEWCDQHE
CCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHH
EILKKIASRTLLTLVNKNVLETSLSTVTPDGVATIFPMQGLPKSGKAPKHILALDRIQDP
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCHHHHHHHHCCCC
GNLGNLFRSGLAGEYEVMWLASGADPLNQKVLRSSAGSVLHMPFERIGHSSSSSIEMLVS
CHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHCCCCEEECCHHHHCCCCCHHHHHHHH
KLNIAIDDNYQVVGTISPNKITDKKVKPYWELDWDLPTVLVLGNEGSGVHASIEACCTDF
HHCEEECCCEEEEEECCCCCCCCCCCCCCEEECCCCCEEEEECCCCCCCHHHHHHHHHHH
VTLPHSSLVDSLNVASAAVPLLLERQRVKMVKGIQKKS
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MITSKRNPLVRKLRGLLKKTGREEHSSLLLEGSHLLEEALKTNFLPTEVIATPEWCDQHE
CCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCHHHHHHH
EILKKIASRTLLTLVNKNVLETSLSTVTPDGVATIFPMQGLPKSGKAPKHILALDRIQDP
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCHHHHHHHHCCCC
GNLGNLFRSGLAGEYEVMWLASGADPLNQKVLRSSAGSVLHMPFERIGHSSSSSIEMLVS
CHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHCCCCEEECCHHHHCCCCCHHHHHHHH
KLNIAIDDNYQVVGTISPNKITDKKVKPYWELDWDLPTVLVLGNEGSGVHASIEACCTDF
HHCEEECCCEEEEEECCCCCCCCCCCCCCEEECCCCCEEEEECCCCCCCHHHHHHHHHHH
VTLPHSSLVDSLNVASAAVPLLLERQRVKMVKGIQKKS
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]