| Definition | Prochlorococcus marinus str. NATL1A, complete genome. |
|---|---|
| Accession | NC_008819 |
| Length | 1,864,731 |
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The map label for this gene is 124026408
Identifier: 124026408
GI number: 124026408
Start: 1387183
End: 1387920
Strand: Reverse
Name: 124026408
Synonym: NATL1_17031
Alternate gene names: NA
Gene position: 1387920-1387183 (Counterclockwise)
Preceding gene: 124026409
Following gene: 124026406
Centisome position: 74.43
GC content: 39.84
Gene sequence:
>738_bases ATGCCAGCAAACAGCAATTTTCAACAAGCTATTCGTGAAGCACAATCTAGTGCACTTATTGGCCCAAATGTAGTAAACAA AGCCTTGCCTTATGTAGGCGGAGGAATGGCATTAACTGGATTAGGTGTTTTAGGTGGACTTTCTTTACAAGCAACTAACA ATCCTTTATTCGGCCCTCTATTTATAGTCGCATTTATTGCAGAAATAGTTTTATTTTTTATGGCAAGTAGCGCTGCCAAT AATGCAAATAACTCCAAAGCTCTTCCACTCTTGACTGGATTTAGCTTGCTAACTGGCTTCACTCTCAGTGGGATTGTTGG CTTAGCAATTCAAGTTGCAGGAATGGGCGCGATAGGAACTGCAGTATTTGCGACTGGAATTACTTTCGTAATTGCTTCTT CAGTTGGCAGGAAAATGAGTGATAACGTTGGCCAAGCTTTGCAAGGTGCAGTTGGTCTTGGATTGCTTGGTTTGATTATC GCTATGGTCTTCCAATTTGTTGGAGGTTTATTTGCTCCAGGAATGTTTGGAGGCAGTGGCTTTGAATTGATGATTGCAGG TTTTGGAACCGTACTTTTTGTTGCAATGTCTTTTGTAGATTTCTACACAATGCCAAGAAGATATAACGACGAGCAGTATT TAGCAGGAGCATTAGGAATGTACCTAACTTACATAAACTTATTTGTTTTTGTTCTTCGTTTAATCATTGCTCTTCAAGGT GGTGGAAGAAGAGATTAA
Upstream 100 bases:
>100_bases AGAACTAGATAAAAAAAGACGATAGGGTGATCCGCATTCACATTCATGGAGACTTATTTTTTTTGTGCCAGAATAGAAAT TAATAATTATCTGGTGCGTT
Downstream 100 bases:
>100_bases TTCTATAAATGCGACATAAAAAAAGAGCCGCAAGGCTCTTTTTTTATGTCGCAACTTCATAGATACTTTCTGATATTGCA TTGATTTGTTTATCGTTATA
Product: integral membrane protein, interacts with FtsH
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 245; Mature: 244
Protein sequence:
>245_residues MPANSNFQQAIREAQSSALIGPNVVNKALPYVGGGMALTGLGVLGGLSLQATNNPLFGPLFIVAFIAEIVLFFMASSAAN NANNSKALPLLTGFSLLTGFTLSGIVGLAIQVAGMGAIGTAVFATGITFVIASSVGRKMSDNVGQALQGAVGLGLLGLII AMVFQFVGGLFAPGMFGGSGFELMIAGFGTVLFVAMSFVDFYTMPRRYNDEQYLAGALGMYLTYINLFVFVLRLIIALQG GGRRD
Sequences:
>Translated_245_residues MPANSNFQQAIREAQSSALIGPNVVNKALPYVGGGMALTGLGVLGGLSLQATNNPLFGPLFIVAFIAEIVLFFMASSAAN NANNSKALPLLTGFSLLTGFTLSGIVGLAIQVAGMGAIGTAVFATGITFVIASSVGRKMSDNVGQALQGAVGLGLLGLII AMVFQFVGGLFAPGMFGGSGFELMIAGFGTVLFVAMSFVDFYTMPRRYNDEQYLAGALGMYLTYINLFVFVLRLIIALQG GGRRD >Mature_244_residues PANSNFQQAIREAQSSALIGPNVVNKALPYVGGGMALTGLGVLGGLSLQATNNPLFGPLFIVAFIAEIVLFFMASSAANN ANNSKALPLLTGFSLLTGFTLSGIVGLAIQVAGMGAIGTAVFATGITFVIASSVGRKMSDNVGQALQGAVGLGLLGLIIA MVFQFVGGLFAPGMFGGSGFELMIAGFGTVLFVAMSFVDFYTMPRRYNDEQYLAGALGMYLTYINLFVFVLRLIIALQGG GRRD
Specific function: Unknown
COG id: COG0670
COG function: function code R; Integral membrane protein, interacts with FtsH
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 25388; Mature: 25257
Theoretical pI: Translated: 9.41; Mature: 9.41
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 4.5 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 4.1 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPANSNFQQAIREAQSSALIGPNVVNKALPYVGGGMALTGLGVLGGLSLQATNNPLFGPL CCCCCCHHHHHHHHHHCCCCCHHHHHHHCCCCCCCHHHHHHHHHHCCEEEECCCCCHHHH FIVAFIAEIVLFFMASSAANNANNSKALPLLTGFSLLTGFTLSGIVGLAIQVAGMGAIGT HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH AVFATGITFVIASSVGRKMSDNVGQALQGAVGLGLLGLIIAMVFQFVGGLFAPGMFGGSG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC FELMIAGFGTVLFVAMSFVDFYTMPRRYNDEQYLAGALGMYLTYINLFVFVLRLIIALQG HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC GGRRD CCCCC >Mature Secondary Structure PANSNFQQAIREAQSSALIGPNVVNKALPYVGGGMALTGLGVLGGLSLQATNNPLFGPL CCCCCHHHHHHHHHHCCCCCHHHHHHHCCCCCCCHHHHHHHHHHCCEEEECCCCCHHHH FIVAFIAEIVLFFMASSAANNANNSKALPLLTGFSLLTGFTLSGIVGLAIQVAGMGAIGT HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH AVFATGITFVIASSVGRKMSDNVGQALQGAVGLGLLGLIIAMVFQFVGGLFAPGMFGGSG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC FELMIAGFGTVLFVAMSFVDFYTMPRRYNDEQYLAGALGMYLTYINLFVFVLRLIIALQG HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC GGRRD CCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA