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The map label for this gene is pcbC

Identifier: 124026260

GI number: 124026260

Start: 1262029

End: 1263084

Strand: Reverse

Name: pcbC

Synonym: NATL1_15541

Alternate gene names: 124026260

Gene position: 1263084-1262029 (Counterclockwise)

Preceding gene: 124026261

Following gene: 124026258

Centisome position: 67.74

GC content: 43.37

Gene sequence:

>1056_bases
ATGCAGACCTACGGAAACCCAGACGTCACCTACGGGTGGTGGGTTGGCAATTCTGTGGTGACCAATCGCGCTGGTCGATT
CATAGGGTCACATATCGGACACACAGGCCTGATTTGCTTTGCAGCTGGTGGAAGTACCCTTTGGGAGCTTGCTCGCTACA
ACCCAGAAATACCAATGGGACATCAAAGTTCCATTTTTCTTGCTCATCTAGCATCTCTTGGCCTCGGCTTTGATGAAGCT
GGAGTATGGACAGGAGCTGGTGTAGCAACAATTGCTATTTTCCATTTGATTTTTTCAGCTGTATATGGAACAGCTGGATT
AGCTCATTCACTCTTATTTGATCCGGACTTGAAAGATGGTCCAATTCCTACCACCAAGAAATTCAAACTTGAATGGGACA
ACCCAGATAATTTGACATTCATTCTTGGACATCACTTGATTTTCTTTGGTGTTGCAAATATTTGGTTCGTAGAGTGGGCA
AGATGGCATGGAATTTATGATCCAGCCATAGGTGAAATCAGAACAATCTTCCCTGGATATGGTGACTTTGGAATGGTTTA
CGGGCATCAGTTCGACTTCCTTACCATTGACAGCCTTGAAGAAGTAATGAGCGGTCATGCATTTTTAGCATTCGTTCAAA
TAAGTGGTGGTGCATGGCACATCGCTACAAAACAACTAGGCGAATACACTGAGTTCAAAGGTAAAGGATTGCTTTCAGCA
GAAGCTGTTCTTTCCTGGTCTCTTGCTGGTATTGGTTGGATGGCAATTGTTGCTGCATTCTGGTGCGCACAAAATACAAC
TGTTTATCCAATTGACTGGTATGGAGAGCCTTTAGCTTTGAAATTTGGAATTTCTCCTTATTGGGTAGACACGGGAGATG
TCTCAGATAGCACTGCGTTTTTAGGCCATACAACTAGAGCAGCATTGTCAAATGTTCATTATTACTTTGGATTTTTCTTT
ATTCAAGGTCATATTTGGCATGCTCTTAGAGCCATGGGCTTTGATTTCCGTCGTGTTGTTGGATCAGTAGCTTCTCTCGC
AACAACTGAGAGTTAG

Upstream 100 bases:

>100_bases
GTAAAAAATGGGAGAGACCTATAAAGACCTCTAACTATTCTGGTAAAAACAATTCCAAAAAGTGTAAGGTAGCCAAAATT
TCGACTTTAATTCCTTAATT

Downstream 100 bases:

>100_bases
TTGATTCAAACTTAAATTTCAATAAAAAAGCCTCATCAAATTTGATGAGGCTTTTTTATTGGGAAAAAATCAAAAAAATT
TACTCCGTTTTTATATCAAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 351; Mature: 351

Protein sequence:

>351_residues
MQTYGNPDVTYGWWVGNSVVTNRAGRFIGSHIGHTGLICFAAGGSTLWELARYNPEIPMGHQSSIFLAHLASLGLGFDEA
GVWTGAGVATIAIFHLIFSAVYGTAGLAHSLLFDPDLKDGPIPTTKKFKLEWDNPDNLTFILGHHLIFFGVANIWFVEWA
RWHGIYDPAIGEIRTIFPGYGDFGMVYGHQFDFLTIDSLEEVMSGHAFLAFVQISGGAWHIATKQLGEYTEFKGKGLLSA
EAVLSWSLAGIGWMAIVAAFWCAQNTTVYPIDWYGEPLALKFGISPYWVDTGDVSDSTAFLGHTTRAALSNVHYYFGFFF
IQGHIWHALRAMGFDFRRVVGSVASLATTES

Sequences:

>Translated_351_residues
MQTYGNPDVTYGWWVGNSVVTNRAGRFIGSHIGHTGLICFAAGGSTLWELARYNPEIPMGHQSSIFLAHLASLGLGFDEA
GVWTGAGVATIAIFHLIFSAVYGTAGLAHSLLFDPDLKDGPIPTTKKFKLEWDNPDNLTFILGHHLIFFGVANIWFVEWA
RWHGIYDPAIGEIRTIFPGYGDFGMVYGHQFDFLTIDSLEEVMSGHAFLAFVQISGGAWHIATKQLGEYTEFKGKGLLSA
EAVLSWSLAGIGWMAIVAAFWCAQNTTVYPIDWYGEPLALKFGISPYWVDTGDVSDSTAFLGHTTRAALSNVHYYFGFFF
IQGHIWHALRAMGFDFRRVVGSVASLATTES
>Mature_351_residues
MQTYGNPDVTYGWWVGNSVVTNRAGRFIGSHIGHTGLICFAAGGSTLWELARYNPEIPMGHQSSIFLAHLASLGLGFDEA
GVWTGAGVATIAIFHLIFSAVYGTAGLAHSLLFDPDLKDGPIPTTKKFKLEWDNPDNLTFILGHHLIFFGVANIWFVEWA
RWHGIYDPAIGEIRTIFPGYGDFGMVYGHQFDFLTIDSLEEVMSGHAFLAFVQISGGAWHIATKQLGEYTEFKGKGLLSA
EAVLSWSLAGIGWMAIVAAFWCAQNTTVYPIDWYGEPLALKFGISPYWVDTGDVSDSTAFLGHTTRAALSNVHYYFGFFF
IQGHIWHALRAMGFDFRRVVGSVASLATTES

Specific function: The antenna complex functions as a light receptor, it captures and delivers excitation energy to photosystems II and I. The Prochlorales pcb genes are not related to the higher plant LHCs

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the psbB/psbC family. IsiA/pcb subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PCBC_PROMT (Q46JX0)

Other databases:

- EMBL:   CP000095
- RefSeq:   YP_291911.1
- ProteinModelPortal:   Q46JX0
- STRING:   Q46JX0
- GeneID:   3606095
- GenomeReviews:   CP000095_GR
- KEGG:   pmn:PMN2A_0717
- eggNOG:   NOG10575
- HOGENOM:   HBG284351
- OMA:   AFHIATR
- ProtClustDB:   CLSK919579
- BioCyc:   PMAR59920:PMN2A_0717-MONOMER
- InterPro:   IPR000932

Pfam domain/function: PF00421 PSII

EC number: NA

Molecular weight: Translated: 38625; Mature: 38625

Theoretical pI: Translated: 6.06; Mature: 6.06

Prosite motif: PS00639 THIOL_PROTEASE_HIS

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x218161c4)-; HASH(0x21850e14)-; HASH(0x21895414)-; HASH(0x21a304a8)-; HASH(0x211d8a8c)-; HASH(0x1fdd13b8)-;

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTYGNPDVTYGWWVGNSVVTNRAGRFIGSHIGHTGLICFAAGGSTLWELARYNPEIPMG
CCCCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHCCCCCCCC
HQSSIFLAHLASLGLGFDEAGVWTGAGVATIAIFHLIFSAVYGTAGLAHSLLFDPDLKDG
CCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCC
PIPTTKKFKLEWDNPDNLTFILGHHLIFFGVANIWFVEWARWHGIYDPAIGEIRTIFPGY
CCCCCEEEEEEECCCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHEECCCC
GDFGMVYGHQFDFLTIDSLEEVMSGHAFLAFVQISGGAWHIATKQLGEYTEFKGKGLLSA
CCCCEEECCCCCEEEHHHHHHHHCCCEEEEEEEECCCEEEEHHHHHCCHHHHCCCCCEEH
EAVLSWSLAGIGWMAIVAAFWCAQNTTVYPIDWYGEPLALKFGISPYWVDTGDVSDSTAF
HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEECCCEEEEECCCCCCCCEE
LGHTTRAALSNVHYYFGFFFIQGHIWHALRAMGFDFRRVVGSVASLATTES
CCCHHHHHHHHHHHHEEHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCH
>Mature Secondary Structure
MQTYGNPDVTYGWWVGNSVVTNRAGRFIGSHIGHTGLICFAAGGSTLWELARYNPEIPMG
CCCCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHCCCCCCCC
HQSSIFLAHLASLGLGFDEAGVWTGAGVATIAIFHLIFSAVYGTAGLAHSLLFDPDLKDG
CCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCC
PIPTTKKFKLEWDNPDNLTFILGHHLIFFGVANIWFVEWARWHGIYDPAIGEIRTIFPGY
CCCCCEEEEEEECCCCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHEECCCC
GDFGMVYGHQFDFLTIDSLEEVMSGHAFLAFVQISGGAWHIATKQLGEYTEFKGKGLLSA
CCCCEEECCCCCEEEHHHHHHHHCCCEEEEEEEECCCEEEEHHHHHCCHHHHCCCCCEEH
EAVLSWSLAGIGWMAIVAAFWCAQNTTVYPIDWYGEPLALKFGISPYWVDTGDVSDSTAF
HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEECCCEEEEECCCCCCCCEE
LGHTTRAALSNVHYYFGFFFIQGHIWHALRAMGFDFRRVVGSVASLATTES
CCCHHHHHHHHHHHHEEHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA