| Definition | Prochlorococcus marinus str. NATL1A, complete genome. |
|---|---|
| Accession | NC_008819 |
| Length | 1,864,731 |
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The map label for this gene is pheT [H]
Identifier: 124025718
GI number: 124025718
Start: 936929
End: 939403
Strand: Reverse
Name: pheT [H]
Synonym: NATL1_10111
Alternate gene names: 124025718
Gene position: 939403-936929 (Counterclockwise)
Preceding gene: 124025724
Following gene: 124025716
Centisome position: 50.38
GC content: 32.85
Gene sequence:
>2475_bases ATGAAGGTATCTGTTTCTTGGCTAAAAGATCTTGTCGAATTTAACAATGATATTGACGAGCTTTCTGAAAAGCTGTCAAT GACAGGCTTTGAGGTTGAATCTTTAGAAGACATATCAGAACAAGCAAAGAATGTTGTTATTGGTTTTGTTGAGGAAATCA CGCCGCATCCAAATGCTGAAAAGCTAAAAGTTTGTTCTGTAGATGTTGGTTTACCCAAAAAGTTGAGCATTGTTTGTGGT GCACCAAATGTAAAAGCAGGATTTCACGTCCTAGTAGCGAAGGTTGGAGCTTATTTATCTTCAAAGTCACTAAAAATAAA ATTATCTAATTTACGTGGCGTTGAAAGCGAGGGTATGATTTGTTCGCTGGAAGAATTAGGTATTGAAAGTAGTAATGAAG GTATTGAAATTCTTGAGGAAAATGAAGCAACTATCCCACCAATTGGTACAAATGCTGTTGATTACCTTTGTTTGAATGAC ACTATAATTGAATTAGCTATTACTGCTAATAGACCTGATGGTATGTCAATGGTAGGTATTGCACGAGAAATATCTACAAT AACAAATTCAAAATTGACATTACCAACTTTAAATTACAATGAAGACTTTAATATATTTGAACCAAAAATAAGTGATAAAG AAACGATTGGAGTAGACTGTATATACTCAATTACGTATATAGACAGTATTGACAATACTGGAAAGACAAATAAAAATATT TTTAATAAATTAAGTTCATTAAAACAAAATTGTATAAATCCTGTTGTAGACATAACAAATTATTTAATGCTTGAACAGGG ACAACCATTACATGCTTTTGATGCAGATCTATTAGATAATATAATTGGTAGAAAGGTTATACCAAATGATTTTGGTATTA GAAATGGTAAGGAAGGTGAATTATTTGTCGCACTTGATAAAAAGGAATATAAGATAAATCCGACGATAAAGTTGATTACC TGCGACGATATTCCAATAGCAATAGCAGGAGTAATAGGTGGAAATAATAGTTCTGTAAGTGATAAAACAACAAGAATTTG GCTAGAAGCTGCTGTATTTACCCCTACTTCAATTAGAAATAGTAGTAGAGAAATAGGTCTTAGGACAGATGCAAGTAGTA GGTACGAAAAAGGAATATCGTCAAACATGACTACTGCTGTTTCTAAAAGAGCTAGTGATTTAATTTCTGTTCAGTTAGGG GGCGACAATATATCTTCTTATGTTAATACTGATTTCAAGAAAAAAAGTATTAGTGTTAATCTAAGAATGGATAAAATCAA TAGCGTCTTAGGTAAGTTAAGTAGCTCAGATAGTAATATTGTAAATAATAATTCTACTAAACTTCGATATCTTAATGAAG ATGAGATTGAGACACTCTTATCAAAACTTGGTCTCATACTTACTTCAAATAATTCCGGTTGGAATGTTCAAGTCCCTCCT TATAGATCATCTGATTTAACAAGAGAAATTGATTTAATAGAGGAGATAGCGAGGCTAATTGGATATGATAATTTTGATTC AAATATGCCAGATCCTCTTGAGCCAGGAGTACTTTCACCCACTAAATTAGTCGAAAGACGTTTACGAAATTCTTTCATCC ATAATGGTTTTCAAGAGGTAGTTACTTCTTCACTTGTTGGTCCAGAAAATACTGATGATAATGCTGTATTAATTAAAAAT CCATTACTATCAGAGACAAGTAGATTAAGAACAAATGTATGGGATGAACATCTTAAAATACTCCAGAGAAACGTATCTTT TGGAGCTGAAGGTTGTTGGATCTTTGAAATAGCAAAGACATACAAAAAAGATAAAGAATGTTTTGTTGAAACTAATTTGT TATCAGGTGCATTGACTGGTAGTAAACGACTTAGTAAGTGGGGTGGAGCATCAAAACAACTAACGTTAGATTATTTTGAA GCAAGAGGCAAACTTAAGCAATCTCTTGATGTTCTTGGAGTTGAGACTATTGATAAGCAGCTAACTGATAAAGATTTCAT GCATCCAGGCCGAACTTCTGAATTATTTGTTGAAGGCAAAAGTATCGGCTTCTTTGGTCAAATTCATCCTTCGCTGTCTG AGAAATTTGATCTAATTAAAGAAACTTATTTATTTAACCTTGATTTTGATTCATTGATAAAAGCTGCGACAAGGAAAACA AATTGGACAAGAATTTACAAGGATTACCCCACTGTTCCTTATATGGAAAGAGATATTGCCCTCATACATTCAAAAAAATA TAGTTCTTTAGAAATCATGGGTCTAATTAAAAAAACTGGAAGGCCATTATTAGAGAAAGTAGAATTAATAGACCGTTACG AGGGCTCTTCAATGCCCGAGGATGCGATTAGCCAAGCTTTTCGAATCAGATACAGAGATGCAAAAAAAACATTAGTAGAG GAAGACATCAATCCAATACACGAAAAGATTAGAAATGCTCTTAAAGAAAAAATAAAAGCGGAACTAAGAAGCTAG
Upstream 100 bases:
>100_bases TTTGGTGAGTCTAGGGAACAAAGTACAATCTTACTAGGCTAAGCACCCTTTTTTATAAATTCATTTGAGCACCTATGTAT AACTCGTGTAAGAGCAAATC
Downstream 100 bases:
>100_bases TCTCAGGAGTATCAACACTGTCTTACTAGTAGTCTAGCAAGGTGTCTAATAATAGATTCTTGAGATAGCTTCATTTTAAG AAAAATATATTTAGAGAATA
Product: phenylalanyl-tRNA synthetase subunit beta
Products: NA
Alternate protein names: Phenylalanine--tRNA ligase beta chain; PheRS [H]
Number of amino acids: Translated: 824; Mature: 824
Protein sequence:
>824_residues MKVSVSWLKDLVEFNNDIDELSEKLSMTGFEVESLEDISEQAKNVVIGFVEEITPHPNAEKLKVCSVDVGLPKKLSIVCG APNVKAGFHVLVAKVGAYLSSKSLKIKLSNLRGVESEGMICSLEELGIESSNEGIEILEENEATIPPIGTNAVDYLCLND TIIELAITANRPDGMSMVGIAREISTITNSKLTLPTLNYNEDFNIFEPKISDKETIGVDCIYSITYIDSIDNTGKTNKNI FNKLSSLKQNCINPVVDITNYLMLEQGQPLHAFDADLLDNIIGRKVIPNDFGIRNGKEGELFVALDKKEYKINPTIKLIT CDDIPIAIAGVIGGNNSSVSDKTTRIWLEAAVFTPTSIRNSSREIGLRTDASSRYEKGISSNMTTAVSKRASDLISVQLG GDNISSYVNTDFKKKSISVNLRMDKINSVLGKLSSSDSNIVNNNSTKLRYLNEDEIETLLSKLGLILTSNNSGWNVQVPP YRSSDLTREIDLIEEIARLIGYDNFDSNMPDPLEPGVLSPTKLVERRLRNSFIHNGFQEVVTSSLVGPENTDDNAVLIKN PLLSETSRLRTNVWDEHLKILQRNVSFGAEGCWIFEIAKTYKKDKECFVETNLLSGALTGSKRLSKWGGASKQLTLDYFE ARGKLKQSLDVLGVETIDKQLTDKDFMHPGRTSELFVEGKSIGFFGQIHPSLSEKFDLIKETYLFNLDFDSLIKAATRKT NWTRIYKDYPTVPYMERDIALIHSKKYSSLEIMGLIKKTGRPLLEKVELIDRYEGSSMPEDAISQAFRIRYRDAKKTLVE EDINPIHEKIRNALKEKIKAELRS
Sequences:
>Translated_824_residues MKVSVSWLKDLVEFNNDIDELSEKLSMTGFEVESLEDISEQAKNVVIGFVEEITPHPNAEKLKVCSVDVGLPKKLSIVCG APNVKAGFHVLVAKVGAYLSSKSLKIKLSNLRGVESEGMICSLEELGIESSNEGIEILEENEATIPPIGTNAVDYLCLND TIIELAITANRPDGMSMVGIAREISTITNSKLTLPTLNYNEDFNIFEPKISDKETIGVDCIYSITYIDSIDNTGKTNKNI FNKLSSLKQNCINPVVDITNYLMLEQGQPLHAFDADLLDNIIGRKVIPNDFGIRNGKEGELFVALDKKEYKINPTIKLIT CDDIPIAIAGVIGGNNSSVSDKTTRIWLEAAVFTPTSIRNSSREIGLRTDASSRYEKGISSNMTTAVSKRASDLISVQLG GDNISSYVNTDFKKKSISVNLRMDKINSVLGKLSSSDSNIVNNNSTKLRYLNEDEIETLLSKLGLILTSNNSGWNVQVPP YRSSDLTREIDLIEEIARLIGYDNFDSNMPDPLEPGVLSPTKLVERRLRNSFIHNGFQEVVTSSLVGPENTDDNAVLIKN PLLSETSRLRTNVWDEHLKILQRNVSFGAEGCWIFEIAKTYKKDKECFVETNLLSGALTGSKRLSKWGGASKQLTLDYFE ARGKLKQSLDVLGVETIDKQLTDKDFMHPGRTSELFVEGKSIGFFGQIHPSLSEKFDLIKETYLFNLDFDSLIKAATRKT NWTRIYKDYPTVPYMERDIALIHSKKYSSLEIMGLIKKTGRPLLEKVELIDRYEGSSMPEDAISQAFRIRYRDAKKTLVE EDINPIHEKIRNALKEKIKAELRS >Mature_824_residues MKVSVSWLKDLVEFNNDIDELSEKLSMTGFEVESLEDISEQAKNVVIGFVEEITPHPNAEKLKVCSVDVGLPKKLSIVCG APNVKAGFHVLVAKVGAYLSSKSLKIKLSNLRGVESEGMICSLEELGIESSNEGIEILEENEATIPPIGTNAVDYLCLND TIIELAITANRPDGMSMVGIAREISTITNSKLTLPTLNYNEDFNIFEPKISDKETIGVDCIYSITYIDSIDNTGKTNKNI FNKLSSLKQNCINPVVDITNYLMLEQGQPLHAFDADLLDNIIGRKVIPNDFGIRNGKEGELFVALDKKEYKINPTIKLIT CDDIPIAIAGVIGGNNSSVSDKTTRIWLEAAVFTPTSIRNSSREIGLRTDASSRYEKGISSNMTTAVSKRASDLISVQLG GDNISSYVNTDFKKKSISVNLRMDKINSVLGKLSSSDSNIVNNNSTKLRYLNEDEIETLLSKLGLILTSNNSGWNVQVPP YRSSDLTREIDLIEEIARLIGYDNFDSNMPDPLEPGVLSPTKLVERRLRNSFIHNGFQEVVTSSLVGPENTDDNAVLIKN PLLSETSRLRTNVWDEHLKILQRNVSFGAEGCWIFEIAKTYKKDKECFVETNLLSGALTGSKRLSKWGGASKQLTLDYFE ARGKLKQSLDVLGVETIDKQLTDKDFMHPGRTSELFVEGKSIGFFGQIHPSLSEKFDLIKETYLFNLDFDSLIKAATRKT NWTRIYKDYPTVPYMERDIALIHSKKYSSLEIMGLIKKTGRPLLEKVELIDRYEGSSMPEDAISQAFRIRYRDAKKTLVE EDINPIHEKIRNALKEKIKAELRS
Specific function: Unknown
COG id: COG0072
COG function: function code J; Phenylalanyl-tRNA synthetase beta subunit
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 tRNA-binding domain [H]
Homologues:
Organism=Escherichia coli, GI1788006, Length=842, Percent_Identity=31.353919239905, Blast_Score=379, Evalue=1e-106,
Paralogues:
None
Copy number: 1,800 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005146 - InterPro: IPR005147 - InterPro: IPR009061 - InterPro: IPR012340 - InterPro: IPR016027 - InterPro: IPR004532 - InterPro: IPR020825 - InterPro: IPR005121 - InterPro: IPR002547 [H]
Pfam domain/function: PF03483 B3_4; PF03484 B5; PF03147 FDX-ACB; PF01588 tRNA_bind [H]
EC number: =6.1.1.20 [H]
Molecular weight: Translated: 91980; Mature: 91980
Theoretical pI: Translated: 5.25; Mature: 5.25
Prosite motif: PS50886 TRBD
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKVSVSWLKDLVEFNNDIDELSEKLSMTGFEVESLEDISEQAKNVVIGFVEEITPHPNAE CCEEHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHEEEEHHHHCCCCCCCC KLKVCSVDVGLPKKLSIVCGAPNVKAGFHVLVAKVGAYLSSKSLKIKLSNLRGVESEGMI CEEEEEECCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCE CSLEELGIESSNEGIEILEENEATIPPIGTNAVDYLCLNDTIIELAITANRPDGMSMVGI EEHHHHCCCCCCCCCEEEECCCCCCCCCCCCCEEEEEECCEEEEEEEECCCCCCCHHHHH AREISTITNSKLTLPTLNYNEDFNIFEPKISDKETIGVDCIYSITYIDSIDNTGKTNKNI HHHHHHHCCCEEEEEECCCCCCCCEECCCCCCCCCCCCEEEEEEEEEECCCCCCCCCHHH FNKLSSLKQNCINPVVDITNYLMLEQGQPLHAFDADLLDNIIGRKVIPNDFGIRNGKEGE HHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCC LFVALDKKEYKINPTIKLITCDDIPIAIAGVIGGNNSSVSDKTTRIWLEAAVFTPTSIRN EEEEECCCCEEECCEEEEEEECCCCEEEEEEECCCCCCCCCCCEEEEEEEEEECCHHCCC SSREIGLRTDASSRYEKGISSNMTTAVSKRASDLISVQLGGDNISSYVNTDFKKKSISVN CCCCCCEECCCCHHHHHCCCCCHHHHHHHHCCCEEEEEECCCCHHHHHCCCCCCCEEEEE LRMDKINSVLGKLSSSDSNIVNNNSTKLRYLNEDEIETLLSKLGLILTSNNSGWNVQVPP EEHHHHHHHHHHCCCCCCCCCCCCCCEEEECCHHHHHHHHHHCCEEEECCCCCEEEECCC YRSSDLTREIDLIEEIARLIGYDNFDSNMPDPLEPGVLSPTKLVERRLRNSFIHNGFQEV CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHH VTSSLVGPENTDDNAVLIKNPLLSETSRLRTNVWDEHLKILQRNVSFGAEGCWIFEIAKT HHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHH YKKDKECFVETNLLSGALTGSKRLSKWGGASKQLTLDYFEARGKLKQSLDVLGVETIDKQ HHCCHHHEEEHHHHHHCCCCHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHH LTDKDFMHPGRTSELFVEGKSIGFFGQIHPSLSEKFDLIKETYLFNLDFDSLIKAATRKT HCCHHCCCCCCCCEEEEECCCCCEEEEECCCHHHHHHHHHHHEEEECCHHHHHHHHHCCC NWTRIYKDYPTVPYMERDIALIHSKKYSSLEIMGLIKKTGRPLLEKVELIDRYEGSSMPE CCEEEEECCCCCCCCCCCCCEEECCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCH DAISQAFRIRYRDAKKTLVEEDINPIHEKIRNALKEKIKAELRS HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MKVSVSWLKDLVEFNNDIDELSEKLSMTGFEVESLEDISEQAKNVVIGFVEEITPHPNAE CCEEHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHEEEEHHHHCCCCCCCC KLKVCSVDVGLPKKLSIVCGAPNVKAGFHVLVAKVGAYLSSKSLKIKLSNLRGVESEGMI CEEEEEECCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCE CSLEELGIESSNEGIEILEENEATIPPIGTNAVDYLCLNDTIIELAITANRPDGMSMVGI EEHHHHCCCCCCCCCEEEECCCCCCCCCCCCCEEEEEECCEEEEEEEECCCCCCCHHHHH AREISTITNSKLTLPTLNYNEDFNIFEPKISDKETIGVDCIYSITYIDSIDNTGKTNKNI HHHHHHHCCCEEEEEECCCCCCCCEECCCCCCCCCCCCEEEEEEEEEECCCCCCCCCHHH FNKLSSLKQNCINPVVDITNYLMLEQGQPLHAFDADLLDNIIGRKVIPNDFGIRNGKEGE HHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCC LFVALDKKEYKINPTIKLITCDDIPIAIAGVIGGNNSSVSDKTTRIWLEAAVFTPTSIRN EEEEECCCCEEECCEEEEEEECCCCEEEEEEECCCCCCCCCCCEEEEEEEEEECCHHCCC SSREIGLRTDASSRYEKGISSNMTTAVSKRASDLISVQLGGDNISSYVNTDFKKKSISVN CCCCCCEECCCCHHHHHCCCCCHHHHHHHHCCCEEEEEECCCCHHHHHCCCCCCCEEEEE LRMDKINSVLGKLSSSDSNIVNNNSTKLRYLNEDEIETLLSKLGLILTSNNSGWNVQVPP EEHHHHHHHHHHCCCCCCCCCCCCCCEEEECCHHHHHHHHHHCCEEEECCCCCEEEECCC YRSSDLTREIDLIEEIARLIGYDNFDSNMPDPLEPGVLSPTKLVERRLRNSFIHNGFQEV CCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHH VTSSLVGPENTDDNAVLIKNPLLSETSRLRTNVWDEHLKILQRNVSFGAEGCWIFEIAKT HHHHCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHH YKKDKECFVETNLLSGALTGSKRLSKWGGASKQLTLDYFEARGKLKQSLDVLGVETIDKQ HHCCHHHEEEHHHHHHCCCCHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHH LTDKDFMHPGRTSELFVEGKSIGFFGQIHPSLSEKFDLIKETYLFNLDFDSLIKAATRKT HCCHHCCCCCCCCEEEEECCCCCEEEEECCCHHHHHHHHHHHEEEECCHHHHHHHHHCCC NWTRIYKDYPTVPYMERDIALIHSKKYSSLEIMGLIKKTGRPLLEKVELIDRYEGSSMPE CCEEEEECCCCCCCCCCCCCEEECCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCH DAISQAFRIRYRDAKKTLVEEDINPIHEKIRNALKEKIKAELRS HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA