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The map label for this gene is 124025089

Identifier: 124025089

GI number: 124025089

Start: 347903

End: 348919

Strand: Direct

Name: 124025089

Synonym: NATL1_03761

Alternate gene names: NA

Gene position: 347903-348919 (Clockwise)

Preceding gene: 124025088

Following gene: 124025090

Centisome position: 18.66

GC content: 39.13

Gene sequence:

>1017_bases
ATGAAACGTCTGTTTTCAAATGTCATTAATTTGACCCTTGTCTTAATAGTTGGAGTAGCTCTTAGTGGTTGTACTGTTAG
CAATGCTTCCATAGGCTCATCAAGTCCTTGGTCACTAGTTGACCTAGATACTGAGGCAAATCCATTAGATGTTGACTTTG
TAGATGACAAAAATGGGTTCTTAGTAGGGACAAACAGATTAATTCTTGAGACAAATGATGGAGGAATAACTTGGAAAGAA
AGAAATTTAGACATACCAAGCGAAGGTAATTTTCGTTTAATAAGCGTTGATTTCAAAGGCCAAGAAGGTTGGATTGCAGG
TCAACCAGGATTGATTCTTCATACCACTGATGGAGGAAAAAATTGGACTCGTCTTGATTTGGGAAATAAGTTACCTGGAG
ATCCGTATTTGATAACAACAATTGATACTGATACTGCTGAGTTAGCAACTACTGCTGGGGCAATTTATAAAACTACCGAT
GCTGGTACCAATTGGGAAGCAATCGTTGTTGATACTTCTGGCTCTGGAGGCATAAGAGAATTAAGACGTACTAATAACGG
TGGATATATAAGTGTTAGTAGCCTTGGTAACTTCTTCTCAGTCCTAAGACCTGGAGAAGAGATATGGAGCCCTCATCAAA
GAGCAAGTAGTAAGAGAGTTCAAAGTGTTGGTGAACAGCCAAATGGTGATTTATGGATGCTTTCTAGAGGAGCTGAAATC
AGATTTAATGCAGATCCTGATGATATCGATTCATGGTCAAAGCCCATAATCCCAATCGTTAATGGGTATAACTATCAAGA
TCTTGTTTGGGATCCATCTAAGTCGATTTGGGCCGCTGGAGGAAATGGAACTTTATTAGTGAGTAATGATCAGGGAAAAA
CTTGGGAAAAAGACCCTGTTGGTGAATCTGTTCCAACAAATTTCATAAGAATTCTATTTCTGGACGATTTAAATAGTGAC
AGTCCTAAGGGATTTGTATTTGGAGAAAGGGGCAATTTACTGCGGTGGCAGGGTTGA

Upstream 100 bases:

>100_bases
GCTTTGGATTTAATAAACTTCCTTCAGGCCAGAAAAACGTTCTTATTTTTGGAAGTCTGGCTTTAGCCGCTGCCTGTTTT
CTCTCTCTTTATTCTTTGAA

Downstream 100 bases:

>100_bases
AATCATAAATTTTTGATGATTTCCATGACTCTGTGTAACCACCTTGCAACAGAGACCGTTTCTTTTGGTTTCGCTTGATA
AGATCACTGAGCTGATTAAG

Product: Ycf48-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 338; Mature: 338

Protein sequence:

>338_residues
MKRLFSNVINLTLVLIVGVALSGCTVSNASIGSSSPWSLVDLDTEANPLDVDFVDDKNGFLVGTNRLILETNDGGITWKE
RNLDIPSEGNFRLISVDFKGQEGWIAGQPGLILHTTDGGKNWTRLDLGNKLPGDPYLITTIDTDTAELATTAGAIYKTTD
AGTNWEAIVVDTSGSGGIRELRRTNNGGYISVSSLGNFFSVLRPGEEIWSPHQRASSKRVQSVGEQPNGDLWMLSRGAEI
RFNADPDDIDSWSKPIIPIVNGYNYQDLVWDPSKSIWAAGGNGTLLVSNDQGKTWEKDPVGESVPTNFIRILFLDDLNSD
SPKGFVFGERGNLLRWQG

Sequences:

>Translated_338_residues
MKRLFSNVINLTLVLIVGVALSGCTVSNASIGSSSPWSLVDLDTEANPLDVDFVDDKNGFLVGTNRLILETNDGGITWKE
RNLDIPSEGNFRLISVDFKGQEGWIAGQPGLILHTTDGGKNWTRLDLGNKLPGDPYLITTIDTDTAELATTAGAIYKTTD
AGTNWEAIVVDTSGSGGIRELRRTNNGGYISVSSLGNFFSVLRPGEEIWSPHQRASSKRVQSVGEQPNGDLWMLSRGAEI
RFNADPDDIDSWSKPIIPIVNGYNYQDLVWDPSKSIWAAGGNGTLLVSNDQGKTWEKDPVGESVPTNFIRILFLDDLNSD
SPKGFVFGERGNLLRWQG
>Mature_338_residues
MKRLFSNVINLTLVLIVGVALSGCTVSNASIGSSSPWSLVDLDTEANPLDVDFVDDKNGFLVGTNRLILETNDGGITWKE
RNLDIPSEGNFRLISVDFKGQEGWIAGQPGLILHTTDGGKNWTRLDLGNKLPGDPYLITTIDTDTAELATTAGAIYKTTD
AGTNWEAIVVDTSGSGGIRELRRTNNGGYISVSSLGNFFSVLRPGEEIWSPHQRASSKRVQSVGEQPNGDLWMLSRGAEI
RFNADPDDIDSWSKPIIPIVNGYNYQDLVWDPSKSIWAAGGNGTLLVSNDQGKTWEKDPVGESVPTNFIRILFLDDLNSD
SPKGFVFGERGNLLRWQG

Specific function: Unknown. The ortholog in A.thaliana is involved in photosystem II (PSII) assembly, but knockout of the corresponding gene in Synechoccus PCC 7002 has no effect on PSII activity [H]

COG id: COG4447

COG function: function code R; Uncharacterized protein related to plant photosystem II stability/assembly factor

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 4 BNR repeats [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002860
- InterPro:   IPR016705
- InterPro:   IPR015943 [H]

Pfam domain/function: PF02012 BNR [H]

EC number: NA

Molecular weight: Translated: 36832; Mature: 36832

Theoretical pI: Translated: 4.39; Mature: 4.39

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRLFSNVINLTLVLIVGVALSGCTVSNASIGSSSPWSLVDLDTEANPLDVDFVDDKNGF
CHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCEEEEECCCCCCEEEEEEECCCCE
LVGTNRLILETNDGGITWKERNLDIPSEGNFRLISVDFKGQEGWIAGQPGLILHTTDGGK
EEECCEEEEEECCCCEEEECCCCCCCCCCCEEEEEEEECCCCCEEECCCCEEEEECCCCC
NWTRLDLGNKLPGDPYLITTIDTDTAELATTAGAIYKTTDAGTNWEAIVVDTSGSGGIRE
CEEEEECCCCCCCCCEEEEEECCCCHHHHHHCCEEEEECCCCCCEEEEEEECCCCCCHHH
LRRTNNGGYISVSSLGNFFSVLRPGEEIWSPHQRASSKRVQSVGEQPNGDLWMLSRGAEI
HHHCCCCCEEEHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHCCCCCCCEEEEECCCEE
RFNADPDDIDSWSKPIIPIVNGYNYQDLVWDPSKSIWAAGGNGTLLVSNDQGKTWEKDPV
EECCCCCCCCCCCCCCEEEECCCCCCCEEECCCCCEEEECCCCEEEEECCCCCCCCCCCC
GESVPTNFIRILFLDDLNSDSPKGFVFGERGNLLRWQG
CCCCCCCEEEEEEEECCCCCCCCEEEEECCCCEEEECC
>Mature Secondary Structure
MKRLFSNVINLTLVLIVGVALSGCTVSNASIGSSSPWSLVDLDTEANPLDVDFVDDKNGF
CHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCEEEEECCCCCCEEEEEEECCCCE
LVGTNRLILETNDGGITWKERNLDIPSEGNFRLISVDFKGQEGWIAGQPGLILHTTDGGK
EEECCEEEEEECCCCEEEECCCCCCCCCCCEEEEEEEECCCCCEEECCCCEEEEECCCCC
NWTRLDLGNKLPGDPYLITTIDTDTAELATTAGAIYKTTDAGTNWEAIVVDTSGSGGIRE
CEEEEECCCCCCCCCEEEEEECCCCHHHHHHCCEEEEECCCCCCEEEEEEECCCCCCHHH
LRRTNNGGYISVSSLGNFFSVLRPGEEIWSPHQRASSKRVQSVGEQPNGDLWMLSRGAEI
HHHCCCCCEEEHHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHCCCCCCCEEEEECCCEE
RFNADPDDIDSWSKPIIPIVNGYNYQDLVWDPSKSIWAAGGNGTLLVSNDQGKTWEKDPV
EECCCCCCCCCCCCCCEEEECCCCCCCEEECCCCCEEEECCCCEEEEECCCCCCCCCCCC
GESVPTNFIRILFLDDLNSDSPKGFVFGERGNLLRWQG
CCCCCCCEEEEEEEECCCCCCCCEEEEECCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA