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The map label for this gene is rbgA [H]

Identifier: 124024983

GI number: 124024983

Start: 249615

End: 250478

Strand: Reverse

Name: rbgA [H]

Synonym: NATL1_02701

Alternate gene names: 124024983

Gene position: 250478-249615 (Counterclockwise)

Preceding gene: 124024985

Following gene: 124024982

Centisome position: 13.43

GC content: 38.08

Gene sequence:

>864_bases
GTGAACAAACAAATAATACAATGGTATCCAGGGCATATTGCTAAAGCAGAAAAACAATTAAAAGAGAATCTGAGAAAAGT
TGATCTAGTTTTCGAAGTGCGAGACGCAAGAATACCCCTTGCCACTTCTCATCCATATCTCCAAAAATGGTTAAAAGGAA
AGAAGCAAATATTAGTTCTCAATAGAAAAGACATGATCAATATTGATGCCTATCAAGCATGGGATAAAAAATTAAGATCT
GAGGGGAAAGTACCATGGTGGTGTGATGCAAAAGCTGGAACAGGCGTTCTCCAAATAAAAAATGCCGCTATTCGTGCTGG
GCAAGAGTTAAATCAAAGGCGTCTTGACAGAGGGATGAAAAATCGAGCAATTAGAGTTCTAACTCTTGGTTTCCCAAATG
TGGGAAAATCTGCTCTCATTAACAGACTAGTTAAAAAAAAGGTTGTATCTAGCTCAAGAAAACCAGGGGTTACTAGAAGT
TTGAGATGGGTAAGATTGGGACAAGATCTAGATTTATTGGATGCTCCTGGCGTTCTGCCGCCTAGATTCGAAGATCAAAA
TGCCGCATTAAAACTGGCTATTTGTGATGATATTGGTCAAGCAGCATACGATACTGAACAGGTAGCCATTAGCTTCATGA
AACTTCTTGAGACATTAGAAAACATCCAAGAAGCGGGTATCAAGTCAATGTGTCTTCAAAATAGATATGGAATATTTGTC
AATGAAACCATTAAAGACAAATATTCATGGCTACTTTCAGCAGCAGAACGTCACACCTCCGGAGATACTCAAAGAATGTC
TCAAAGATTACTTGATGATTTTCGCAAAAATTTGTTGGGAAATATCTCTCTTGAACTCCCCTAA

Upstream 100 bases:

>100_bases
GAACTTAGGATTTTGAAAACTACACTTCCAAAATAAATCAAAAATCAACTTTTACAATTTTTAGATTAATCAATTTCAAC
CAAATTATTTTTAAAATTCC

Downstream 100 bases:

>100_bases
TGGATAAAGAAATCAAGCATGGATTTGGGCAGGGCCCAGGTGAATTATTTGAGGGCAAATATAAGAAACCTTTGCCTATG
CGGCTTGATAGATGGCTGGT

Product: ribosomal biogenesis GTPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 287; Mature: 287

Protein sequence:

>287_residues
MNKQIIQWYPGHIAKAEKQLKENLRKVDLVFEVRDARIPLATSHPYLQKWLKGKKQILVLNRKDMINIDAYQAWDKKLRS
EGKVPWWCDAKAGTGVLQIKNAAIRAGQELNQRRLDRGMKNRAIRVLTLGFPNVGKSALINRLVKKKVVSSSRKPGVTRS
LRWVRLGQDLDLLDAPGVLPPRFEDQNAALKLAICDDIGQAAYDTEQVAISFMKLLETLENIQEAGIKSMCLQNRYGIFV
NETIKDKYSWLLSAAERHTSGDTQRMSQRLLDDFRKNLLGNISLELP

Sequences:

>Translated_287_residues
MNKQIIQWYPGHIAKAEKQLKENLRKVDLVFEVRDARIPLATSHPYLQKWLKGKKQILVLNRKDMINIDAYQAWDKKLRS
EGKVPWWCDAKAGTGVLQIKNAAIRAGQELNQRRLDRGMKNRAIRVLTLGFPNVGKSALINRLVKKKVVSSSRKPGVTRS
LRWVRLGQDLDLLDAPGVLPPRFEDQNAALKLAICDDIGQAAYDTEQVAISFMKLLETLENIQEAGIKSMCLQNRYGIFV
NETIKDKYSWLLSAAERHTSGDTQRMSQRLLDDFRKNLLGNISLELP
>Mature_287_residues
MNKQIIQWYPGHIAKAEKQLKENLRKVDLVFEVRDARIPLATSHPYLQKWLKGKKQILVLNRKDMINIDAYQAWDKKLRS
EGKVPWWCDAKAGTGVLQIKNAAIRAGQELNQRRLDRGMKNRAIRVLTLGFPNVGKSALINRLVKKKVVSSSRKPGVTRS
LRWVRLGQDLDLLDAPGVLPPRFEDQNAALKLAICDDIGQAAYDTEQVAISFMKLLETLENIQEAGIKSMCLQNRYGIFV
NETIKDKYSWLLSAAERHTSGDTQRMSQRLLDDFRKNLLGNISLELP

Specific function: Binds GTP and GDP [H]

COG id: COG1161

COG function: function code R; Predicted GTPases

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]

Homologues:

Organism=Homo sapiens, GI93277113, Length=304, Percent_Identity=30.9210526315789, Blast_Score=114, Evalue=9e-26,
Organism=Homo sapiens, GI45643129, Length=182, Percent_Identity=28.021978021978, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI45643127, Length=182, Percent_Identity=28.021978021978, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI45593130, Length=182, Percent_Identity=28.021978021978, Blast_Score=69, Evalue=6e-12,
Organism=Homo sapiens, GI7019419, Length=158, Percent_Identity=31.6455696202532, Blast_Score=67, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI193211047, Length=204, Percent_Identity=32.843137254902, Blast_Score=97, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI17534827, Length=178, Percent_Identity=28.0898876404494, Blast_Score=75, Evalue=3e-14,
Organism=Saccharomyces cerevisiae, GI6324381, Length=162, Percent_Identity=33.9506172839506, Blast_Score=76, Evalue=7e-15,
Organism=Saccharomyces cerevisiae, GI6320842, Length=179, Percent_Identity=30.1675977653631, Blast_Score=67, Evalue=4e-12,
Organism=Saccharomyces cerevisiae, GI6323744, Length=232, Percent_Identity=28.0172413793103, Blast_Score=65, Evalue=1e-11,
Organism=Drosophila melanogaster, GI85815858, Length=210, Percent_Identity=31.4285714285714, Blast_Score=95, Evalue=6e-20,
Organism=Drosophila melanogaster, GI28572990, Length=200, Percent_Identity=31, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI19922460, Length=162, Percent_Identity=30.2469135802469, Blast_Score=67, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023179
- InterPro:   IPR019991
- InterPro:   IPR016478
- InterPro:   IPR002917 [H]

Pfam domain/function: PF01926 MMR_HSR1 [H]

EC number: NA

Molecular weight: Translated: 32744; Mature: 32744

Theoretical pI: Translated: 10.53; Mature: 10.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKQIIQWYPGHIAKAEKQLKENLRKVDLVFEVRDARIPLATSHPYLQKWLKGKKQILVL
CCCCEEEECCCHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCHHHHHHHCCCCEEEEE
NRKDMINIDAYQAWDKKLRSEGKVPWWCDAKAGTGVLQIKNAAIRAGQELNQRRLDRGMK
CCCCEEECHHHHHHHHHHHHCCCCCEEECCCCCCCEEEECHHHHHHHHHHHHHHHHCCHH
NRAIRVLTLGFPNVGKSALINRLVKKKVVSSSRKPGVTRSLRWVRLGQDLDLLDAPGVLP
CCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHEEECCCCCCCCCCCCCC
PRFEDQNAALKLAICDDIGQAAYDTEQVAISFMKLLETLENIQEAGIKSMCLQNRYGIFV
CCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
NETIKDKYSWLLSAAERHTSGDTQRMSQRLLDDFRKNLLGNISLELP
EHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCEEECC
>Mature Secondary Structure
MNKQIIQWYPGHIAKAEKQLKENLRKVDLVFEVRDARIPLATSHPYLQKWLKGKKQILVL
CCCCEEEECCCHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCHHHHHHHCCCCEEEEE
NRKDMINIDAYQAWDKKLRSEGKVPWWCDAKAGTGVLQIKNAAIRAGQELNQRRLDRGMK
CCCCEEECHHHHHHHHHHHHCCCCCEEECCCCCCCEEEECHHHHHHHHHHHHHHHHCCHH
NRAIRVLTLGFPNVGKSALINRLVKKKVVSSSRKPGVTRSLRWVRLGQDLDLLDAPGVLP
CCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHEEECCCCCCCCCCCCCC
PRFEDQNAALKLAICDDIGQAAYDTEQVAISFMKLLETLENIQEAGIKSMCLQNRYGIFV
CCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
NETIKDKYSWLLSAAERHTSGDTQRMSQRLLDDFRKNLLGNISLELP
EHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]