Click here to switch to the map view.

The map label for this gene is csgD [C]

Identifier: 124024939

GI number: 124024939

Start: 212018

End: 212290

Strand: Direct

Name: csgD [C]

Synonym: NATL1_02261

Alternate gene names: 124024939

Gene position: 212018-212290 (Clockwise)

Preceding gene: 124024937

Following gene: 124024948

Centisome position: 11.37

GC content: 42.49

Gene sequence:

>273_bases
ATGTTTACAGGAGAGATCGCTAATTCGTCCCACATGGGACTCTCAGCTAGGGAAATGGAGATCATTGGATTAGTTGCAGA
TGGCCTGACTAATCAAGAGATTGCTGAAAGGCTCACAATTAGCAAAAGGACGGTAGACAATCATGTCAGCAATATGTTCA
CAAAAACAGGTTCGAAAAACAGAGTGGCTTTATTGAACTGGGCCATGGACCATGGAAAAATCTGCCGAGATGGGTTCAAT
TGTTGTTCATTGCCCGATGAAACAGATACTTAA

Upstream 100 bases:

>100_bases
GAAGTTTAGATTTCACATGTATTTTTTACTAGATAATTACTATCGGTGATTAAAGGCCCTAATCTAAGTAGTATTAATTA
ATGAGTTGTGAGTGAGGGGA

Downstream 100 bases:

>100_bases
TAGAACTAATTATTCTCGATCTCAGCAACATCTGATAAGGGCATGAGAGAAAATTCAATTGATGATAACTCAAATAATTT
TGCATAGGCAATGCAAGCTT

Product: LuxR family regulatory protein

Products: NA

Alternate protein names: Transcriptional Regulator; Transcriptional Regulator LuxR Family; LuxR Transcriptional Regulator; Transcriptional Regulator LuxR Family Protein; Two-Component Response Regulator; Response Regulator Like-Protein; Response Regulator Receiver; LuxR Family Transcriptional Regulatory Protein; Two Component Transcriptional Regulator LuxR Family; Bacterial Regulatory Protein LuxR Family; Two-Component System Response Regulator; Regulatory Protein LuxR; Sigma-70 Region 4 Family

Number of amino acids: Translated: 90; Mature: 90

Protein sequence:

>90_residues
MFTGEIANSSHMGLSAREMEIIGLVADGLTNQEIAERLTISKRTVDNHVSNMFTKTGSKNRVALLNWAMDHGKICRDGFN
CCSLPDETDT

Sequences:

>Translated_90_residues
MFTGEIANSSHMGLSAREMEIIGLVADGLTNQEIAERLTISKRTVDNHVSNMFTKTGSKNRVALLNWAMDHGKICRDGFN
CCSLPDETDT
>Mature_90_residues
MFTGEIANSSHMGLSAREMEIIGLVADGLTNQEIAERLTISKRTVDNHVSNMFTKTGSKNRVALLNWAMDHGKICRDGFN
CCSLPDETDT

Specific function: Necessary For Transcription Of The Csgab Operon. May Have The Capability To Respond To Starvation And/Or High Cell Density By Activating Csgba Transcription. [C]

COG id: COG2771

COG function: function code K; DNA-binding HTH domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 9917; Mature: 9917

Theoretical pI: Translated: 5.58; Mature: 5.58

Prosite motif: PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.3 %Cys     (Translated Protein)
5.6 %Met     (Translated Protein)
8.9 %Cys+Met (Translated Protein)
3.3 %Cys     (Mature Protein)
5.6 %Met     (Mature Protein)
8.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFTGEIANSSHMGLSAREMEIIGLVADGLTNQEIAERLTISKRTVDNHVSNMFTKTGSKN
CCCCCCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
RVALLNWAMDHGKICRDGFNCCSLPDETDT
EEEEEEECCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MFTGEIANSSHMGLSAREMEIIGLVADGLTNQEIAERLTISKRTVDNHVSNMFTKTGSKN
CCCCCCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
RVALLNWAMDHGKICRDGFNCCSLPDETDT
EEEEEEECCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA