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The map label for this gene is rbcR [H]

Identifier: 124024932

GI number: 124024932

Start: 203273

End: 204223

Strand: Reverse

Name: rbcR [H]

Synonym: NATL1_02191

Alternate gene names: 124024932

Gene position: 204223-203273 (Counterclockwise)

Preceding gene: 124024938

Following gene: 124024929

Centisome position: 10.95

GC content: 37.22

Gene sequence:

>951_bases
ATGGCCGAGATTCCATTCACTCTTGATCAACTAAGAATCCTCAAAGCAATCGTTGATGAGGGGAGCTTCAAAAAAGCTGC
AGATAGTCTCTTTGTGACTCAACCGGCTGTAAGTTTGCAAGTGCAAAATCTTGAAAAACAACTAGATATTGCCATATTTG
ATAGAGGTGGAAGAAAAGCACAACTAACTGAAGCTGGAAAGCTTCTTCTAAATTATTGTGAGAAAATTTTAGGAGAATGC
CTAGAGACTTGCAAAGCAGTTGAAGATTTAAATAATCTCAAAGGGGGATCCATCATTATTGGTGCTAGCCAAACTACTGG
TACTTACTTAATGCCAAGGATGATTGGAGTTTTCAGACAAAAGTATCCAGAAGTTTCTGTTCAACTTCAAATTCATAGCA
CTAGAAGAACAGGATGGAGTGTTGCTAATGGCCAGATAGATATTGCCATTATCGGAGGCCAACTGCCATTAGAATTAAAT
GAATTATTAGAAGTTATTCCTTTTGCGACAGATGAGTTAGCTCTTGTTTTACCTACTAATCATCCATTAGCAAAGTCAAA
AGAGCTCACAAAAGAAGATCTATACAGTCTTAGGTTTATAACATTAGACAACCAATCAACCACAAGAAAAGTCGTAGATC
AACTATTGTCCTCTTCAGGATTAGACGTACAGAGGTTACATATAGAAATGGAATTAAACTCTCTTGAAGCTATAAAAAAT
GCTGTTCAATCAAATCTAGGAGCAGCTTTTCTCCCCGTAGTATCAATTGAAAGAGAATTATCGGGAGGCAGTATTCACAG
ACCAATCGTGGCAGACCTAGAAGTCAAAAGAGAACTGAAAGTAATCACCAATCCTGGCAGATATTCATCTAGAGCTGCAG
AAGCATTCACACGAGACATATTACCTCTATTTGCTAGTTCATTTTCACCACTATTTAATCCTCAAAATTAA

Upstream 100 bases:

>100_bases
TAAAAACCTCTTAATAAATTATTAGATCCATACCGGACCAACAGTTCGAGTTGTTTTTCCCTACATTTTATTTTAATAAC
TGCCATGAAGGCCTGCCACC

Downstream 100 bases:

>100_bases
AATTGTATAGCCTCTTTATTTATACCAACAGCATCTTCTTCAGCACCTCTAATTATAAATTTATTTTCATTAACATCTGC
TTGATAAACGCAGCGCACAA

Product: putative Rubisco transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 316; Mature: 315

Protein sequence:

>316_residues
MAEIPFTLDQLRILKAIVDEGSFKKAADSLFVTQPAVSLQVQNLEKQLDIAIFDRGGRKAQLTEAGKLLLNYCEKILGEC
LETCKAVEDLNNLKGGSIIIGASQTTGTYLMPRMIGVFRQKYPEVSVQLQIHSTRRTGWSVANGQIDIAIIGGQLPLELN
ELLEVIPFATDELALVLPTNHPLAKSKELTKEDLYSLRFITLDNQSTTRKVVDQLLSSSGLDVQRLHIEMELNSLEAIKN
AVQSNLGAAFLPVVSIERELSGGSIHRPIVADLEVKRELKVITNPGRYSSRAAEAFTRDILPLFASSFSPLFNPQN

Sequences:

>Translated_316_residues
MAEIPFTLDQLRILKAIVDEGSFKKAADSLFVTQPAVSLQVQNLEKQLDIAIFDRGGRKAQLTEAGKLLLNYCEKILGEC
LETCKAVEDLNNLKGGSIIIGASQTTGTYLMPRMIGVFRQKYPEVSVQLQIHSTRRTGWSVANGQIDIAIIGGQLPLELN
ELLEVIPFATDELALVLPTNHPLAKSKELTKEDLYSLRFITLDNQSTTRKVVDQLLSSSGLDVQRLHIEMELNSLEAIKN
AVQSNLGAAFLPVVSIERELSGGSIHRPIVADLEVKRELKVITNPGRYSSRAAEAFTRDILPLFASSFSPLFNPQN
>Mature_315_residues
AEIPFTLDQLRILKAIVDEGSFKKAADSLFVTQPAVSLQVQNLEKQLDIAIFDRGGRKAQLTEAGKLLLNYCEKILGECL
ETCKAVEDLNNLKGGSIIIGASQTTGTYLMPRMIGVFRQKYPEVSVQLQIHSTRRTGWSVANGQIDIAIIGGQLPLELNE
LLEVIPFATDELALVLPTNHPLAKSKELTKEDLYSLRFITLDNQSTTRKVVDQLLSSSGLDVQRLHIEMELNSLEAIKNA
VQSNLGAAFLPVVSIERELSGGSIHRPIVADLEVKRELKVITNPGRYSSRAAEAFTRDILPLFASSFSPLFNPQN

Specific function: Trans-acting transcriptional regulator of RuBisCO genes (rbcL and rbcS) expression [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI157672245, Length=237, Percent_Identity=31.2236286919831, Blast_Score=129, Evalue=3e-31,
Organism=Escherichia coli, GI1788481, Length=291, Percent_Identity=31.2714776632302, Blast_Score=124, Evalue=9e-30,
Organism=Escherichia coli, GI145693105, Length=289, Percent_Identity=25.6055363321799, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1790399, Length=281, Percent_Identity=26.3345195729537, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1787530, Length=253, Percent_Identity=28.4584980237154, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI87082132, Length=255, Percent_Identity=27.0588235294118, Blast_Score=95, Evalue=5e-21,
Organism=Escherichia coli, GI1788296, Length=214, Percent_Identity=30.3738317757009, Blast_Score=92, Evalue=5e-20,
Organism=Escherichia coli, GI1787879, Length=250, Percent_Identity=28.8, Blast_Score=85, Evalue=8e-18,
Organism=Escherichia coli, GI1788748, Length=294, Percent_Identity=24.8299319727891, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1788887, Length=200, Percent_Identity=27.5, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788297, Length=260, Percent_Identity=27.3076923076923, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1789204, Length=294, Percent_Identity=24.8299319727891, Blast_Score=76, Evalue=4e-15,
Organism=Escherichia coli, GI87081904, Length=222, Percent_Identity=26.5765765765766, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1788626, Length=263, Percent_Identity=27.7566539923954, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI87082024, Length=269, Percent_Identity=27.8810408921933, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1790262, Length=316, Percent_Identity=24.6835443037975, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1786401, Length=150, Percent_Identity=32, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1789492, Length=307, Percent_Identity=26.3843648208469, Blast_Score=66, Evalue=4e-12,
Organism=Escherichia coli, GI1789639, Length=122, Percent_Identity=28.6885245901639, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1787601, Length=125, Percent_Identity=32, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34840; Mature: 34708

Theoretical pI: Translated: 5.78; Mature: 5.78

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEIPFTLDQLRILKAIVDEGSFKKAADSLFVTQPAVSLQVQNLEKQLDIAIFDRGGRKA
CCCCCCHHHHHHHHHHHHCCCCHHHHHCCEEEECCHHHHHHHHHHHHCCEEEEECCCCEE
QLTEAGKLLLNYCEKILGECLETCKAVEDLNNLKGGSIIIGASQTTGTYLMPRMIGVFRQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHH
KYPEVSVQLQIHSTRRTGWSVANGQIDIAIIGGQLPLELNELLEVIPFATDELALVLPTN
CCCCEEEEEEEEECCCCCCEEECCEEEEEEECCCCCCCHHHHHHHHCCCCCCEEEEEECC
HPLAKSKELTKEDLYSLRFITLDNQSTTRKVVDQLLSSSGLDVQRLHIEMELNSLEAIKN
CCCCCCHHHHHHHHHEEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEEEEEHHHHHHHHH
AVQSNLGAAFLPVVSIERELSGGSIHRPIVADLEVKRELKVITNPGRYSSRAAEAFTRDI
HHHHCCCCHHHHHHHHHHHCCCCCCCCCEECCHHHHCEEEEEECCCCCHHHHHHHHHHHH
LPLFASSFSPLFNPQN
HHHHHHCCCCCCCCCC
>Mature Secondary Structure 
AEIPFTLDQLRILKAIVDEGSFKKAADSLFVTQPAVSLQVQNLEKQLDIAIFDRGGRKA
CCCCCHHHHHHHHHHHHCCCCHHHHHCCEEEECCHHHHHHHHHHHHCCEEEEECCCCEE
QLTEAGKLLLNYCEKILGECLETCKAVEDLNNLKGGSIIIGASQTTGTYLMPRMIGVFRQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHH
KYPEVSVQLQIHSTRRTGWSVANGQIDIAIIGGQLPLELNELLEVIPFATDELALVLPTN
CCCCEEEEEEEEECCCCCCEEECCEEEEEEECCCCCCCHHHHHHHHCCCCCCEEEEEECC
HPLAKSKELTKEDLYSLRFITLDNQSTTRKVVDQLLSSSGLDVQRLHIEMELNSLEAIKN
CCCCCCHHHHHHHHHEEEEEEECCCCHHHHHHHHHHCCCCCCEEEEEEEEEHHHHHHHHH
AVQSNLGAAFLPVVSIERELSGGSIHRPIVADLEVKRELKVITNPGRYSSRAAEAFTRDI
HHHHCCCCHHHHHHHHHHHCCCCCCCCCEECCHHHHCEEEEEECCCCCHHHHHHHHHHHH
LPLFASSFSPLFNPQN
HHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA