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The map label for this gene is ycbY [C]

Identifier: 124024829

GI number: 124024829

Start: 112838

End: 113962

Strand: Direct

Name: ycbY [C]

Synonym: NATL1_01161

Alternate gene names: 124024829

Gene position: 112838-113962 (Clockwise)

Preceding gene: 124024828

Following gene: 124024832

Centisome position: 6.05

GC content: 35.29

Gene sequence:

>1125_bases
ATGAAAATTGTTGCATCTATTTCACAAGGTCTTGAAAAAGAGGGTGCAAAAGAGTTGATAGAACTTGGAGCTAAATCAGT
TAAAGCTTCAAGGAGGCATATATCCTTTGAAGCTGATATGGCTTGTTTATACAGAATACATTTAAGAGCTCGCTTATCCT
TTCGATTTTTAAGAGAGATTGTCAAATTCACTTGTCATGGTCCTAATCAACTTTATGACGGTGTTCAAAGGTTAATTGAT
TGGGAAAATTGGCTTCAGCCAAGACAAAGTTTTCGAGTAGATGTAACTGGATTTGGAGAAGGGTTATCACATACTCATTT
CACTGCTTTGCAGGTTAAAAATGCAATTATTGATTTACAAAGAGAACGATGGGGTTCTCGTTCAAGCATTGATTTGAACA
ATCCAGATATTTGTTTTCATTTGCATTTGTCAAATTATCAAGCTGTTTTGAGTGTTGATGGTAGTAACTCGAGTCTTCAT
AAAAGAGGGTACAGACCAGCTGTTGGCATGGCTCCGATTAAGGAAACCTTGGCCGCAGGTTTAATGAGAATGACTGAGTG
GGATGGAACGAAAAATTTGGTAGATCCATTATGCGGTTCCGGAACCTTTTTGATTGAAGGTGTGAGCATGTTACTTGGCA
TTGCATCTGGTATGGATAGACAATTTCTGTTTAAGAATTGGCCAGATTTTGATATCTCTTTTTGGAATAAAGAATTACAA
ATGGCAAAGAAGATAAAACCTTTAAATAAGAAGTTATCTAAAATAATTGGATGTGAAGTTGATGAAATGATTGCTCACTC
TGCTAGTGAGAACGTTAGGAAAGCGGGCTTAAAAGATTACATAGAAATAATTAACTGTCCTTTTCAAGAATTTCAACTAC
CTCCTGGTTTAGGATTTTTAATTTGTAATCCTCCTTATGGGAAAAGAATAGGAGATGAAAATGAACTACCTAATCTATAC
AAACAATTAGGTGAATACTGCAAGACACAAGCTTCTGGATGGGATCTTTGGTTACTTAATGGGAATCCAAAGCTAAGCAA
ATATTTAGGGATGAAAGCAAGTCGACGTTTTCAAGTAAATAATGGTTCAATTGATTGCCGATGGTTGAATTATAAAATTA
AATAA

Upstream 100 bases:

>100_bases
GTCCATTAGAAAATAGACCTATATATTCTGACAGATCTTTGGGAATTAATCGATTAGTGTTTAAAGAACTGCTTTATGCT
TTTTTAATAACTTAAAAGTA

Downstream 100 bases:

>100_bases
TTTAATTTTTTCCTAAAACAGCTTTTGTAGTTTTTGCTATTCCCTCCAATGTTTCTGGAAGGTAAGGACCTTTTGCCAGA
TATCCACCAATTCTTAGACT

Product: RNA methylase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 374; Mature: 374

Protein sequence:

>374_residues
MKIVASISQGLEKEGAKELIELGAKSVKASRRHISFEADMACLYRIHLRARLSFRFLREIVKFTCHGPNQLYDGVQRLID
WENWLQPRQSFRVDVTGFGEGLSHTHFTALQVKNAIIDLQRERWGSRSSIDLNNPDICFHLHLSNYQAVLSVDGSNSSLH
KRGYRPAVGMAPIKETLAAGLMRMTEWDGTKNLVDPLCGSGTFLIEGVSMLLGIASGMDRQFLFKNWPDFDISFWNKELQ
MAKKIKPLNKKLSKIIGCEVDEMIAHSASENVRKAGLKDYIEIINCPFQEFQLPPGLGFLICNPPYGKRIGDENELPNLY
KQLGEYCKTQASGWDLWLLNGNPKLSKYLGMKASRRFQVNNGSIDCRWLNYKIK

Sequences:

>Translated_374_residues
MKIVASISQGLEKEGAKELIELGAKSVKASRRHISFEADMACLYRIHLRARLSFRFLREIVKFTCHGPNQLYDGVQRLID
WENWLQPRQSFRVDVTGFGEGLSHTHFTALQVKNAIIDLQRERWGSRSSIDLNNPDICFHLHLSNYQAVLSVDGSNSSLH
KRGYRPAVGMAPIKETLAAGLMRMTEWDGTKNLVDPLCGSGTFLIEGVSMLLGIASGMDRQFLFKNWPDFDISFWNKELQ
MAKKIKPLNKKLSKIIGCEVDEMIAHSASENVRKAGLKDYIEIINCPFQEFQLPPGLGFLICNPPYGKRIGDENELPNLY
KQLGEYCKTQASGWDLWLLNGNPKLSKYLGMKASRRFQVNNGSIDCRWLNYKIK
>Mature_374_residues
MKIVASISQGLEKEGAKELIELGAKSVKASRRHISFEADMACLYRIHLRARLSFRFLREIVKFTCHGPNQLYDGVQRLID
WENWLQPRQSFRVDVTGFGEGLSHTHFTALQVKNAIIDLQRERWGSRSSIDLNNPDICFHLHLSNYQAVLSVDGSNSSLH
KRGYRPAVGMAPIKETLAAGLMRMTEWDGTKNLVDPLCGSGTFLIEGVSMLLGIASGMDRQFLFKNWPDFDISFWNKELQ
MAKKIKPLNKKLSKIIGCEVDEMIAHSASENVRKAGLKDYIEIINCPFQEFQLPPGLGFLICNPPYGKRIGDENELPNLY
KQLGEYCKTQASGWDLWLLNGNPKLSKYLGMKASRRFQVNNGSIDCRWLNYKIK

Specific function: Unknown

COG id: COG0116

COG function: function code L; Predicted N6-adenine-specific DNA methylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 THUMP domain [H]

Homologues:

Organism=Escherichia coli, GI1787181, Length=377, Percent_Identity=32.0954907161804, Blast_Score=188, Evalue=4e-49,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002052
- InterPro:   IPR002296
- InterPro:   IPR000241
- InterPro:   IPR004114 [H]

Pfam domain/function: PF02926 THUMP; PF01170 UPF0020 [H]

EC number: NA

Molecular weight: Translated: 42533; Mature: 42533

Theoretical pI: Translated: 9.32; Mature: 9.32

Prosite motif: PS51165 THUMP ; PS00092 N6_MTASE ; PS01261 UPF0020

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKIVASISQGLEKEGAKELIELGAKSVKASRRHISFEADMACLYRIHLRARLSFRFLREI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
VKFTCHGPNQLYDGVQRLIDWENWLQPRQSFRVDVTGFGEGLSHTHFTALQVKNAIIDLQ
HHHHCCCCHHHHHHHHHHHCHHHHHCHHHCCEEEEEECCCCCCCCHHHHHHHHHHHHHHH
RERWGSRSSIDLNNPDICFHLHLSNYQAVLSVDGSNSSLHKRGYRPAVGMAPIKETLAAG
HHHCCCCCCCCCCCCCEEEEEEECCCEEEEEECCCCCHHHHCCCCCCCCCHHHHHHHHHH
LMRMTEWDGTKNLVDPLCGSGTFLIEGVSMLLGIASGMDRQFLFKNWPDFDISFWNKELQ
HHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCHHHHHHHHH
MAKKIKPLNKKLSKIIGCEVDEMIAHSASENVRKAGLKDYIEIINCPFQEFQLPPGLGFL
HHHHHCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCEEE
ICNPPYGKRIGDENELPNLYKQLGEYCKTQASGWDLWLLNGNPKLSKYLGMKASRRFQVN
EECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHCCCCCCEEEEC
NGSIDCRWLNYKIK
CCCEEEEEEEEEEC
>Mature Secondary Structure
MKIVASISQGLEKEGAKELIELGAKSVKASRRHISFEADMACLYRIHLRARLSFRFLREI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
VKFTCHGPNQLYDGVQRLIDWENWLQPRQSFRVDVTGFGEGLSHTHFTALQVKNAIIDLQ
HHHHCCCCHHHHHHHHHHHCHHHHHCHHHCCEEEEEECCCCCCCCHHHHHHHHHHHHHHH
RERWGSRSSIDLNNPDICFHLHLSNYQAVLSVDGSNSSLHKRGYRPAVGMAPIKETLAAG
HHHCCCCCCCCCCCCCEEEEEEECCCEEEEEECCCCCHHHHCCCCCCCCCHHHHHHHHHH
LMRMTEWDGTKNLVDPLCGSGTFLIEGVSMLLGIASGMDRQFLFKNWPDFDISFWNKELQ
HHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCHHHHHHHHH
MAKKIKPLNKKLSKIIGCEVDEMIAHSASENVRKAGLKDYIEIINCPFQEFQLPPGLGFL
HHHHHCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCEEE
ICNPPYGKRIGDENELPNLYKQLGEYCKTQASGWDLWLLNGNPKLSKYLGMKASRRFQVN
EECCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHCCCCCCEEEEC
NGSIDCRWLNYKIK
CCCEEEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]