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The map label for this gene is rpl21e [H]

Identifier: 124028499

GI number: 124028499

Start: 1651570

End: 1651893

Strand: Reverse

Name: rpl21e [H]

Synonym: Hbut_1660

Alternate gene names: 124028499

Gene position: 1651893-1651570 (Counterclockwise)

Preceding gene: 124028500

Following gene: 124028498

Centisome position: 99.08

GC content: 49.38

Gene sequence:

>324_bases
GTGAAGCCGTCCAAAGGCTTTAGGCACCGTACTAGGAAGGTGCTAAAGAAGCACATACGTGAGCGTGGTGCAGTACCACC
ACTAAGCCTACTAATGTACGAGTACAAGCCGGGCGACAAAGTCTACATAATCATAAATCCATCAGTTATGAAGGGTATGC
CGCACAAAAGATATCATGGCAAGGTTGGAACAGTAATCGGTAAGCGTGGAAAGGCATACATTGTCGAGGTTAGGGTGGGC
GGTAAGACTAAGATACTCTTCGTGAGACCCGAGCATCTGCGCCCAGTACCGCCGGAGGCTTTAACACCTCCAAAGCGTGA
GTAA

Upstream 100 bases:

>100_bases
CCGAGCTGGACGTCCTCGGAGTCTTTAGCTAGGAGTCACTCCGTCATGGAAGCTAAGCCTATTTTAGCTAGTTATAGATG
CGGGGCGTCGGGGGAGAACA

Downstream 100 bases:

>100_bases
CCCCTAGGAGCGTGCAGCTACGCGATATCAGCTGTATCTGCATTTTATCCCTCCCATGCAATACGGTTAGAGTTGTTAAG
ACGTGAAGCTGTAGGGTGCT

Product: 50S ribosomal protein L21e

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 107; Mature: 107

Protein sequence:

>107_residues
MKPSKGFRHRTRKVLKKHIRERGAVPPLSLLMYEYKPGDKVYIIINPSVMKGMPHKRYHGKVGTVIGKRGKAYIVEVRVG
GKTKILFVRPEHLRPVPPEALTPPKRE

Sequences:

>Translated_107_residues
MKPSKGFRHRTRKVLKKHIRERGAVPPLSLLMYEYKPGDKVYIIINPSVMKGMPHKRYHGKVGTVIGKRGKAYIVEVRVG
GKTKILFVRPEHLRPVPPEALTPPKRE
>Mature_107_residues
MKPSKGFRHRTRKVLKKHIRERGAVPPLSLLMYEYKPGDKVYIIINPSVMKGMPHKRYHGKVGTVIGKRGKAYIVEVRVG
GKTKILFVRPEHLRPVPPEALTPPKRE

Specific function: Unknown

COG id: COG2139

COG function: function code J; Ribosomal protein L21E

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribosomal protein L21e family [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6319668, Length=98, Percent_Identity=41.8367346938776, Blast_Score=60, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001147
- InterPro:   IPR022856
- InterPro:   IPR018259
- InterPro:   IPR008991 [H]

Pfam domain/function: PF01157 Ribosomal_L21e [H]

EC number: NA

Molecular weight: Translated: 12273; Mature: 12273

Theoretical pI: Translated: 11.46; Mature: 11.46

Prosite motif: PS01171 RIBOSOMAL_L21E

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPSKGFRHRTRKVLKKHIRERGAVPPLSLLMYEYKPGDKVYIIINPSVMKGMPHKRYHG
CCCCCCHHHHHHHHHHHHHHHCCCCCCHHEEEEEECCCCEEEEEECCHHHCCCCCCCCCC
KVGTVIGKRGKAYIVEVRVGGKTKILFVRPEHLRPVPPEALTPPKRE
CCCEEEECCCCEEEEEEEECCCEEEEEECHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKPSKGFRHRTRKVLKKHIRERGAVPPLSLLMYEYKPGDKVYIIINPSVMKGMPHKRYHG
CCCCCCHHHHHHHHHHHHHHHCCCCCCHHEEEEEECCCCEEEEEECCHHHCCCCCCCCCC
KVGTVIGKRGKAYIVEVRVGGKTKILFVRPEHLRPVPPEALTPPKRE
CCCEEEECCCCEEEEEEEECCCEEEEEECHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA